Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Juglans_20regia_20[refseq_20GCF_5F001411555.1_202015-10-22] 105,803 sequences; 699,672,627 total letters Query= NC_016659.1 Length=47536 Score E Sequences producing significant alignments: (Bits) Value seq47040 161 3e-35 seq54963 145 2e-30 seq2016 96.9 1e-15 >seq47040 Length=8764 Score = 161 bits (178), Expect = 3e-35 Identities = 167/217 (77%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 25837 CCGTGCATAGCAGCGAATA--AAGCTCCACCGAATACCCCTGCAACACCGAGCATATGGA 25894 || ||||||||| |||| |||| | |||||||| || || ||||| | |||||| | Sbjct 5473 CCATGCATAGCACTAAATAGGAAGC--CGCCGAATACACCAGCTACACCTAACATATGAA 5530 Query 25895 ACGGATGCATAAGGATATTGTGTTCTGCCTGAAAGACAAACATAAAATTGAAAGTCCCTG 25954 | || ||||||||||| ||||| || ||||| || |||| ||| || |||||||| || | Sbjct 5531 ATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCATGAAGTTGAAAGTACCAG 5590 Query 25955 AAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGGTAGACTAAGAATA 26014 |||| || |||||| |||| | ||| || || ||||| |||| || |||| ||||| | Sbjct 5591 AAATTCCTAGAGGCTTACCGTGAGAAAAGCTTCCTTGACCAATTGGATAGATCAAGAAAA 5650 Query 26015 CAGCAAATGCTGCTGCAACAGGGGCTGAATAAGCTAC 26051 ||| | || ||||||||||| |||||||| || || Sbjct 5651 CAGTAGTAGCAGCTGCAACAGGAGCTGAATATGCAAC 5687 >seq54963 Length=251348 Score = 145 bits (160), Expect = 2e-30 Identities = 161/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 25837 CCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACACCGAGCATATGGAAC 25896 || |||||| || |||| | || |||||||| || |||| | ||| || || Sbjct 117407 CCATGCATAACACTAAATAGGGAGCCGCCGAATACACCAATTACACGTAACATGTGAAAT 117348 Query 25897 GGATGCATAAGGATATTGTGTTCTGCCTGAAAGACAAACATAAAATTGAAAGTCCCTGAA 25956 || ||||||||||| ||||| || ||||| || |||| ||| || |||||||| || ||| Sbjct 117347 GGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCATGAAGTTGAAAGTACCAGAA 117288 Query 25957 ATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGGTAGACTAAGAATACA 26016 || || ||||||||||| ||||| || || ||||| |||| || |||| || || ||| Sbjct 117287 ATTCCTAGAGGCATACCGTCAGAAAAGCTTCCTTGACCAATTGGATAGATCAATAAAACA 117228 Query 26017 GCAAATGCTGCTGCAACAGGGGCTGAATAAGCTAC 26051 ||| || ||| ||||||| |||||||| || || Sbjct 117227 GCAGTAGCAGCTACAACAGGAGCTGAATATGCAAC 117193 >seq2016 Length=232386 Score = 96.9 bits (106), Expect = 1e-15 Identities = 103/135 (76%), Gaps = 1/135 (1%) Strand=Plus/Minus Query 25861 CCACCGAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCT 25920 |||| |||||| || || ||||| | ||| || || || |||| ||| || || || || Sbjct 155605 CCACTGAATACACCAGCTACACCTAACATGTGAAATGGGTGCAAAAG-ATGTTCTGCTCA 155547 Query 25921 GCCTGAAAGACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAG 25980 ||||| || |||| ||| || |||||||| | ||| | || |||||||||||||||| Sbjct 155546 GCCTGGAATACAATCATGAACTTGAAAGTACGCGAACTTCCTGGAGGCATACCATCAGAA 155487 Query 25981 AAACTCCCTTGTCCA 25995 || || ||||| ||| Sbjct 155486 AAGCTTCCTTGACCA 155472 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151802633626028