Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Juglans_20regia_20[refseq_20GCF_5F001411555.1_202015-10-22] 105,803 sequences; 699,672,627 total letters Query= NC_019443.1 Length=172879 Score E Sequences producing significant alignments: (Bits) Value seq47040 170 2e-37 seq54963 156 5e-33 >seq47040 Length=8764 Score = 170 bits (188), Expect = 2e-37 Identities = 169/219 (77%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 162883 GTTGCATACTCTGCACCAGTATCTGCAGCATTCGCTGTGTTCTTGGTCTATCCTTTCGGT 162942 |||||||| || || || || | || || |||| |||||| ||||||| | ||| Sbjct 5687 GTTGCATATTCAGCTCCTGTTGCAGCTGCTACTACTGTTTTCTTGATCTATCCAATTGGT 5628 Query 162943 CAAGGTTCTTTCTCTGACGCAATGCCTCTTGGTATTTCTGGTACTTTTAACTACATGTTC 163002 ||||| || ||| ||| | |||||| || |||||||||||||| |||| |||| | Sbjct 5627 CAAGGAAGCTTTTCTCACGGTAAGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATT 5568 Query 163003 GTGTTCCAAGCAGAGCACAACATCCTAATGCACCCCTTCCATATGATTGGAGTCGCAGGT 163062 || ||||| || |||||||||||||| |||||||| || |||||| | || || || ||| Sbjct 5567 GTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCATATGTTAGGTGTAGCTGGT 5508 Query 163063 GTATTCGGTGGTTCACTCTTTAGTGCTATGCACGGTTCT 163101 |||||||| || | || |||||||||||||| |||||| Sbjct 5507 GTATTCGGCGGCTTCCTATTTAGTGCTATGCATGGTTCT 5469 >seq54963 Length=251348 Score = 156 bits (172), Expect = 5e-33 Identities = 166/219 (76%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 162883 GTTGCATACTCTGCACCAGTATCTGCAGCATTCGCTGTGTTCTTGGTCTATCCTTTCGGT 162942 |||||||| || || || || || || ||||| || ||| ||||||| | ||| Sbjct 117193 GTTGCATATTCAGCTCCTGTTGTAGCTGCTACTGCTGTTTTATTGATCTATCCAATTGGT 117252 Query 162943 CAAGGTTCTTTCTCTGACGCAATGCCTCTTGGTATTTCTGGTACTTTTAACTACATGTTC 163002 ||||| || ||||||| |||||||| || |||||||||||||| |||| |||| | Sbjct 117253 CAAGGAAGCTTTTCTGACGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATT 117312 Query 163003 GTGTTCCAAGCAGAGCACAACATCCTAATGCACCCCTTCCATATGATTGGAGTCGCAGGT 163062 || ||||| || |||||||||||||| |||||||| || || ||| | | || ||| Sbjct 117313 GTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTACGTGTAATTGGT 117372 Query 163063 GTATTCGGTGGTTCACTCTTTAGTGCTATGCACGGTTCT 163101 |||||||| || || || ||||||| |||||| |||||| Sbjct 117373 GTATTCGGCGGCTCCCTATTTAGTGTTATGCATGGTTCT 117411 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 552353324611320