Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Juglans_20regia_20[refseq_20GCF_5F001411555.1_202015-10-22] 105,803 sequences; 699,672,627 total letters Query= NC_019444.1 Length=176043 Score E Sequences producing significant alignments: (Bits) Value seq1861 347 1e-90 seq47040 149 7e-31 seq54963 136 4e-27 >seq1861 Length=68153 Score = 347 bits (384), Expect = 1e-90 Identities = 645/942 (68%), Gaps = 16/942 (2%) Strand=Plus/Plus Query 164643 TTTGTTTTTGTGGGGTGGTCTGGATTACTACTTCTTCCCACTGCTTATCTGGCCATTGGC 164702 || |||||||| || ||||| || || |||| |||| ||| ||| | ||| | || Sbjct 26985 TTCGTTTTTGTAGGTTGGTCCGGTCTATTACTCTTTCCTTGTGCCTATTTTGCCTTAGGG 27044 Query 164703 GGTTGGCTTACTGGCACAGCTTTTGTCACGAGTTGGTACACCCATGGTCTTGCTTCTTCC 164762 |||||| |||| || ||| | ||||| || | ||| || || || | || |||| Sbjct 27045 GGTTGGTTTACAGGTACAACCTTTGTAACTTCATAGTATACACACGGATTGGCGAGTTCC 27104 Query 164763 TATCTTGAAGG-TGCTAACTTTCTCACAGCAGCTGTCTCGACGCCTGCTGATGCTATGGG 164821 ||| | ||||| ||| ||||| | || || || || || || | ||| || | | | Sbjct 27105 TATTTGGAAGGCTGC-AACTTCTTAACCGCTGCAGTTTCTACTCTCGCTAATAGTTTAGC 27163 Query 164822 TCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAGGGGAATTTCCAGCGGTGGTGCCA 164881 || ||| | | |||| |||||||| || | || || |||| | ||||| || Sbjct 27164 ACACTCTTTGTTGTTACTATGGGGTCCAGAAACACAAGGAGATTTTACTTGTTGGTGTCA 27223 Query 164882 ACTTGGGGGACTATGGAATTTCGTGGCTCTCCACGGTGCCTTCGCCCTAATTGGTTTCAT 164941 | | || | || |||| ||| || |||||| | ||||| ||| ||| Sbjct 27224 ATTAGGTAGTCTGTGGACTTTTGTTGCTCTCT-----------GGACTAATAGGTCTCAC 27272 Query 164942 GCTCCGCCAGTTTGAGCTGGCACG-TCTCATTGGTATCCGTCCTTACAATGCTATTGCGT 165000 | | || ||||||| || || || ||| | | | || ||||| ||||| || || | Sbjct 27273 GTTACGTTAGTTTGAACTTGCTCGATCTGTTCAAT-TGCGACCTTATAATGCAATCGCAT 27331 Query 165001 TCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTCCTTATCTACCCACTGGGTCAGTCCA 165060 |||||| ||| |||||| ||||| | || || || || || | ||| ||||| || Sbjct 27332 TCTCTGCTCCAATTGCTTTTTTTTTTTTGGTATTGCTGATTTATCTACTAGGTCAATCGG 27391 Query 165061 GTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCAATCTTTAGATTCCTGTTGTTCCTTC 165120 ||||||| || | || |||||| || ||||| || ||| |||| | | || | Sbjct 27392 GTTGGTTCTTTGTGCCTAGCTTTGGTGTAGCAGCTATATTTC-ATTCTTTCTCTTTTTCT 27450 Query 165121 AAGGATTCCACAACTGGACCCTCAACCCCTTCCATATGATGGGTGTTGCAGGTATCTTGG 165180 |||| || || || ||||| | ||||| || ||||||||||| ||||| ||| | | | Sbjct 27451 AAGGGTTTCATAATTGGACATTGAACCCATTTCATATGATGGGGGTTGCTGGTGTAATTG 27510 Query 165181 GAGGAGCATTGCTATCTGCTATTCATGGAGTCACAGTTGAAAATACATTATACGAGGATG 165240 | | || |||||| | ||||||||| | || | |||| ||| |||| || |||| Sbjct 27511 GCGCTGCTCTGCTATGCGTTATTCATGGTGCTACCTTAGAAAGTACTTTATTTGAAGATG 27570 Query 165241 GAGAGCAGGCAAATACCTTTAAGGCGTTTGATTCGACACAGGAAGAAGAGACTTATTCTA 165300 | || |||||||| ||| || ||| | | || || | ||||| |||||||| | Sbjct 27571 GTGATGGTGCAAATACATTTTGTGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAA 27630 Query 165301 TGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGCATTGCGTTTTCTAACAAGCGGT 165360 ||||||| || |||| ||| ||||| || ||||| || || | ||||| || || || | Sbjct 27631 TGGTCACCGCTAACCACTTTTGGTCCCAAATCTTTGGGGTTACTTTTTCCAATAAACGTT 27690 Query 165361 GGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTTTGGACATCCTCTATTGGCA 165420 || | ||||| | ||| | ||||| | || | || | |||| || |||| Sbjct 27691 GGTTACATTTCCTTATGCTATTTGTACTAGTAACCAGTTTATGGATGAGTGCTCTTGGAG 27750 Query 165421 TTATTGGTCTTGCTCTCAACCTTCGTGCTTACGATTTCGTGAGTCAGGAGATCAGAGCAG 165480 | | ||||| ||||| ||||| ||||| || || || || |||||| ||| | |||| Sbjct 27751 TAGTCGGTCTGGCTCTGAACCTACGTGCCTATGACTTTGTTTCTCAGGAAATCCGTGCAG 27810 Query 165481 CAGAAGATCCAGAATTTGAGACCTTCTACACCAAAAACATCCTATTGAATGAAGGACTAC 165540 ||||||||| ||||||||||| |||||||| ||||| || || || |||||||| | | Sbjct 27811 TAGAAGATCCTGAATTTGAGACTTTCTACACAAAAAATATTCTTTTAAATGAAGGTATTC 27870 Query 165541 GTGCTTGGTTGGCACCTGCTGATCAACCCCATGAAAACTTTA 165582 ||||||| ||| || ||||| || ||||||||||||| Sbjct 27871 ATGCTTGGATGGAGGCTCAAGATCAGCCTCATGAAAACTTTA 27912 >seq47040 Length=8764 Score = 149 bits (164), Expect = 7e-31 Identities = 162/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 163276 GTAGCATACTCTGCACCTGTTGCAGCAGCATCCGCAGTCTTCCTGGTCTATCCTTTCGGT 163335 || ||||| || || ||||||||||| || | | || ||| || ||||||| | ||| Sbjct 5687 GTTGCATATTCAGCTCCTGTTGCAGCTGCTACTACTGTTTTCTTGATCTATCCAATTGGT 5628 Query 163336 CAAGGTTCTTTCTCTGACGCAATGCCACTTGGCATCTCTGGCACATTCAACTACATGCTT 163395 ||||| || ||| ||| | ||| || || || ||||| || ||||||| |||| || Sbjct 5627 CAAGGAAGCTTTTCTCACGGTAAGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATT 5568 Query 163396 GTCTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCATATGTTGGGAGTCGCTGGT 163455 || ||||| || |||||||||||||| |||||||| || |||||||| || || |||||| Sbjct 5567 GTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCATATGTTAGGTGTAGCTGGT 5508 Query 163456 GTCTTCGGTGGATCACTCTTCTCGGCAATGCATGG 163490 || ||||| || | || || || |||||||| Sbjct 5507 GTATTCGGCGGCTTCCTATTTAGTGCTATGCATGG 5473 >seq54963 Length=251348 Score = 136 bits (150), Expect = 4e-27 Identities = 150/200 (75%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 163276 GTAGCATACTCTGCACCTGTTGCAGCAGCATCCGCAGTCTTCCTGGTCTATCCTTTCGGT 163335 || ||||| || || ||||||| ||| || | || || || || ||||||| | ||| Sbjct 117193 GTTGCATATTCAGCTCCTGTTGTAGCTGCTACTGCTGTTTTATTGATCTATCCAATTGGT 117252 Query 163336 CAAGGTTCTTTCTCTGACGCAATGCCACTTGGCATCTCTGGCACATTCAACTACATGCTT 163395 ||||| || ||||||| ||||| || || || ||||| || ||||||| |||| || Sbjct 117253 CAAGGAAGCTTTTCTGACGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATT 117312 Query 163396 GTCTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCATATGTTGGGAGTCGCTGGT 163455 || ||||| || |||||||||||||| |||||||| || || ||||| | || |||| Sbjct 117313 GTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTACGTGTAATTGGT 117372 Query 163456 GTCTTCGGTGGATCACTCTT 163475 || ||||| || || || || Sbjct 117373 GTATTCGGCGGCTCCCTATT 117392 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562464734183640