Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Juglans_20regia_20[refseq_20GCF_5F001411555.1_202015-10-22] 105,803 sequences; 699,672,627 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq50617 197 3e-45 seq54992 172 1e-37 >seq50617 Length=115889 Score = 197 bits (218), Expect = 3e-45 Identities = 441/657 (67%), Gaps = 14/657 (2%) Strand=Plus/Minus Query 48041 AACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTGCTTAACGCGGGACTCTGAGGGT 48100 |||||| |||| |||| ||| || || | || ||| ||| ||||| ||| | Sbjct 92517 AACTCCCTCTCGATCTCCACCGCGTCGCGGACGATCCCCTTGACGCGCTGCTCACTCAGC 92458 Query 48101 TTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCC 48160 || || | ||| | || || |||| ||| || ||||| | |||| || ||||| Sbjct 92457 TTCTTCCTTAGGAGGGTG---TATAGCAGGCACGCGAAGTCGCAATGCAGCCCCTCGTCA 92401 Query 48161 CGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAG 48220 ||| ||| ||| ||||||||||| |||||||||||| | ||| | || ||| | |||| Sbjct 92400 CGGGAGATCAGCTCGTTGGAGAAGGTGAGACCAGGCATCAACCCGCGCTTTTTCAACCAG 92341 Query 48221 AAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGCGGTGAGC 48280 || || || ||| || ||||||||||| || || || |||||| ||| |||| Sbjct 92340 AATATGGCGCAGAAGCTTCCGGAGAAGAAGATCCCTTCGACGCACGCGAAGGCGATGAGA 92281 Query 48281 CTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCCAGGAAAGCGCCCAGTCTGCCTTCTTC 48340 | ||| | || || | ||| ||||||| || ||||| | |||||||| Sbjct 92280 CGCTCCGCAAAGGACTCCGAGCCGTC---GATCCAGCGCAGGGCCCACTGGGCCTTCTTA 92224 Query 48341 TTGATGCATGGCATCGTCTCTATGGCCCGGAAGAGC---TTCTTGCACTCACCTGCGTCC 48397 | || || | ||||| ||||| ||||||| | ||| |||| ||| ||| Sbjct 92223 GCCACACAGGGGACGGTCTCGATGGCATGGAAGAGGCGGTGCTT---CTCATCTGAATCC 92167 Query 48398 GCAACATAGGTAGTGAGCAGCTTTGCGTACATCTCAGAGTGCACATTCTCTATAGCGATC 48457 | ||||| |||| | |||||||| ||||| | ||| || || || ||| Sbjct 92166 TTGATGTAGGTCTCCAGCAACAGACTATACATCTCGGAGTGAATATTTTCGATGGCAATC 92107 Query 48458 TGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGCACTTCTGTGGAGAATCTCTCCAGC 48517 ||||| ||||||||||| | |||||| ||||| || || | ||| ||| ||||| Sbjct 92106 TGGAAGCCGTAGAAGGCGCGGGCCTCGGCAACCTGGACCTCCTTCATGAACCTC-CCAGC 92048 Query 48518 -AGATTCTCATTGACTATCCCATCTGAAGCAGCAAAGAAGGCAAGGACATGTTTAAGGAA 48576 || ||||| || || ||||||||||| |||||||| || ||||| || || || Sbjct 92047 GAGGTTCTCCAAAACGATGCCATCTGAAGCTGCAAAGAAAGCTAGGACGTGGGAAATAAA 91988 Query 48577 ATGGCGCTCGTTGTGGGTGAGAGCATTCCAGCCCTGTACGTCTTTGCCCAGGTCCACTTC 48636 || ||||| | ||||||| || | ||| | | ||| | ||||| || || Sbjct 91987 GTGTTTCTCGTCGGGGGTGAGGGCTTCCCATTGGCGGAGGTCCTGAGAGAGGTCAACCTC 91928 Query 48637 TTCCACAGTCCAGAAGGACGCGAGTGCTTTTTTGTACATGCCCCATATGTCCGGATA 48693 || |||||||||| || || ||||| |||||||| ||||||| || || || Sbjct 91927 CTCGGCAGTCCAGAAAGAGGCCTCGGCTTTCTTGTACATCTCCCATATTTCGGGGTA 91871 >seq54992 Length=480207 Score = 172 bits (190), Expect = 1e-37 Identities = 390/579 (67%), Gaps = 17/579 (3%) Strand=Plus/Plus Query 48122 TAGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAG 48181 || |||| ||| || ||||| | ||| | || ||||| || ||| ||| |||||||| Sbjct 460076 TAAAGCAGGCACGCGAAGTCGCAGTGGAGCCCCTCGTCTCGCGAGATCAGCTCGTTGGAG 460135 Query 48182 AAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCA 48241 ||| ||||| ||||| | || | || || | |||||| || || ||| || Sbjct 460136 AAGGTCAGACCGGGCATCAAGCCGCGCTTCTTCAACCAGAAGATGGCGCAGAAGCTTCCG 460195 Query 48242 GAGAAGAAGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTC 48301 ||||||||||| || || || |||||| ||| || | ||| |||| || || | Sbjct 460196 GAGAAGAAGATACCTTCTACACACGCGAAAGCGACGATGCGCTCAGCGAAGGACTCGGCC 460255 Query 48302 TTGTCTGAGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCT 48361 ||| ||||||| || ||||| | ||||||||| || ||| || | ||||| Sbjct 460256 CCGTC---GATCCAGCGCAGGGCCCACTGTGCCTTCTTAGCGACGCAAGGGACGGTCTCG 460312 Query 48362 ATGGCCCGGAAGAGC---TTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGC 48418 ||||| ||||||| | ||| || | | |||| | ||||| ||||| Sbjct 460313 ATGGCGTGGAAGAGGCGGTGCTT---CTGGGCGGAGTCCTTGATGTAGGTCTCGAGCAAA 460369 Query 48419 TTTGCGTACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTG 48478 ||||||||| ||||| | |||||| || ||||||||||| ||||||||||| | | Sbjct 460370 AGACTGTACATCTCGGAGTGAATATTCTCGATGGCGATCTGGAAGCCGTAGAAGGCGCGG 460429 Query 48479 GCCTCAAACACCTGCACTTCTGTGGAGAATCTCTCCAGC-AGATTCTCATTGACTATCCC 48537 ||||| ||||| || || | ||| || ||||| |||||||| || || || Sbjct 460430 GCCTCGGCGACCTGGACCTCCTTCATGAACCT-GCCAGCGAGATTCTCCAAAACGATGCC 460488 Query 48538 ATCTGAAGCAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAG 48597 || || || |||||||||||||||| || || ||| || ||||| | | | || Sbjct 460489 GTCAGAGGCGGCAAAGAAGGCAAGGATGTGGGAAATGAAGTGTTTCTCGTCGGGAGAAAG 460548 Query 48598 AGCATTCCAGCCCTG---TACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGA 48654 | ||||| | || | ||| | | ||||| || || || | |||||||| || Sbjct 460549 -GGATTCC--CAATGAGAAAGGTCCTCGGAGAGGTCAACCTCCTCGGCGGTCCAGAATGA 460605 Query 48655 CGCGAGTGCTTTTTTGTACATGCCCCATATGTCCGGATA 48693 || ||||| |||||||| ||||||| ||||| || Sbjct 460606 GGCCTCAGCTTTCTTGTACATTTCCCATATTTCCGGGTA 460644 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 930300812939520