Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Juglans_20regia_20[refseq_20GCF_5F001411555.1_202015-10-22] 105,803 sequences; 699,672,627 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq54992 183 6e-41 seq50617 176 8e-39 >seq54992 Length=480207 Score = 183 bits (202), Expect = 6e-41 Identities = 553/855 (65%), Gaps = 20/855 (2%) Strand=Plus/Minus Query 25474 GATATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGAT 25533 || |||||||| ||||||||||| ||| | |||| |||||||||||| ||| |||| Sbjct 460638 GAAATATGGGAAATGTACAAGAAAGCTGAGGCCTCATTCTGGACCGCCGAGGAGGTTGAC 460579 Query 25534 CTGGCCAAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAGCATTTTCTCAAG 25593 || || ||||| | ||| | | || || |||||| | || || | Sbjct 460578 CTCTCCGAGGACCTTTCTCATTGGGAATCCCTTTCTCCCGACGAGAAACACTTCATTTCC 460519 Query 25594 TACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGA 25653 || | | || |||||||| |||||||| || || || |||||||| | || Sbjct 460518 CACATCCTTGCCTTCTTTGCCGCCTCTGACGGCATCGTTTTGGAGAATCTCGCTGGCAGG 460459 Query 25654 TTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATC 25713 |||| | ||| || ||| || |||||| |||||||| |||||||| |||||| Sbjct 460458 TTCATGAAGGAGGTCCAGGTCGCCGAGGCCCGCGCCTTCTACGGCTTCCAGATCGCCATC 460399 Query 25714 GAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGAT---GACGTACATTACAGACGTC 25770 || ||| | ||||| ||| |||| || ||| || | ||| ||||| | ||| | Sbjct 460398 GAGAATATTCACTCCGAGATGTA---CAGTCTTTTGCTCGAGACCTACATCAAGGACTCC 460342 Query 25771 GCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCG 25830 ||| ||| | || || || ||||||||| | | || || || | |||||| Sbjct 460341 GCCCAGAAGCACCGCCTCTTCCACGCCATCGAGACCGTCCCTTGCGTCGCTAAGAAGGCA 460282 Query 25831 CGGTGGGCCATGAAGTGGATCAACAGC-CAGAGCGCTACGTTTGGCGAGCGGCTGGTAGC 25889 | ||||||| || |||||| || | | ||| || || | ||||| | || || Sbjct 460281 CAGTGGGCCCTGCGCTGGATCGACGGGGCCGAGTCCTTCGCT----GAGCGCATCGTCGC 460226 Query 25890 CTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCTTCTGGCTCA 25948 || || ||| || || ||||| ||| ||| || |||| ||||||||||| | | Sbjct 460225 TTTCGCGTGTGTAGAAGGTATCTTCTTCTCCGGAAGCTTCTGCG-CCATCTTCTGGTTGA 460167 Query 25949 AGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGG 26008 || || || |||||||| ||| ||| ||||||||||| ||| | ||||||| Sbjct 460166 AGAAGCGCGGCTTGATGCCCGGTCTGACCTTCTCCAACGAGCTGATCTCGCGAGACGAGG 460107 Query 26009 GTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTCTC 26068 | |||||| | || || || |||||||| ||| | | |||| | || | | Sbjct 460106 GGCTCCACTGCGACTTCGCGTGCCTGCTTTACTC---TCTCTTGAAAAAAAAGCTGAGTG 460050 Query 26069 AAGAGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNNNN 26128 || || | || | | |||||| || || ||||| ||||||| ||||| Sbjct 460049 AACAGCGCATCAAGGGAATCATCCGCGACGCGGTGGACATCGAGAGAGAGTTCGTGTGCG 459990 Query 26129 NNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATTGAGT 26188 |||| |||||| | || |||||||| ||||| || | Sbjct 459989 ACGCGCTGCCATGTGCGTTGGTGGGAATGAACGGCGAGCTGATGAGCCAGTACATCGAAT 459930 Query 26189 ATGTGGCCGACCATCTGCTGTGCCAGCTGGGACTCGCCAGACTCTACAGTACG--CCTAA 26246 ||||||||| || || | ||| || || | |||||| ||| | || Sbjct 459929 TCGTGGCCGACAGGCTATTGGGTGCGCTAGGGTACGGGAAGATCTACA--ACGTCCAGAA 459872 Query 26247 CCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAGAG 26306 ||| ||||| | ||||| ||| |||||| ||||||||||||| |||||||| ||||| Sbjct 459871 CCCCTTCGATTGGATGGAGCTCATCTCGTTGCAAGGGAAGACCAATTTCTTTGAGAAGAG 459812 Query 26307 GGTCGGCGACTATCA 26321 ||||| || || || Sbjct 459811 AGTCGGGGAGTACCA 459797 >seq50617 Length=115889 Score = 176 bits (194), Expect = 8e-39 Identities = 551/852 (65%), Gaps = 14/852 (2%) Strand=Plus/Plus Query 25474 GATATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGAT 25533 || |||||||||||||||||||| || | ||| |||||| ||||| ||| |||| Sbjct 91877 GAAATATGGGAGATGTACAAGAAAGCCGAGGCCTCTTTCTGGACTGCCGAGGAGGTTGAC 91936 Query 25534 CTGGCCAAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAGCATTTTCTCAAG 25593 || | ||||| | | ||| | || || || |||||| | || ||| | Sbjct 91937 CTCTCTCAGGACCTCCGCCAATGGGAAGCCCTCACCCCCGACGAGAAACACTTTATTTCC 91996 Query 25594 TACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGA 25653 |||| | || ||||||||||| || ||||| || || ||||| || | ||| Sbjct 91997 CACGTCCTAGCTTTCTTTGCAGCTTCAGATGGCATCGTTTTGGAGAACCTCGCTGGGAGG 92056 Query 25654 TTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATC 25713 |||| | ||| || ||| | |||||| |||||||| |||||||| |||||| Sbjct 92057 TTCATGAAGGAGGTCCAGGTTGCCGAGGCCCGCGCCTTCTACGGCTTCCAGATTGCCATC 92116 Query 25714 GAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACATTACAGACGTCGCC 25773 |||||| | ||||| ||| ||||| | | ||| ||| ||||| | || | Sbjct 92117 GAAAATATTCACTCCGAGATGTATAGTCTGTTGCTGGAGACCTACATCAAGGATTCAGAT 92176 Query 25774 GAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCGG 25833 |||| | || || || |||||||||| | | ||| | | | |||||| | | Sbjct 92177 GAGAAGCACCGCCTCTTCCATGCCATCGAGACCGTCCCCTGTGTGGCTAAGAAGGCCCAG 92236 Query 25834 TGGGCCATGAAGTGGATCAACAGC-CAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTT 25892 |||||| || |||||| || || | ||| | |||| ||||| || | ||||| Sbjct 92237 TGGGCCCTGCGCTGGATCGACGGCTCGGAG----TCCTTTGCGGAGCGTCTCATCGCCTT 92292 Query 25893 TGC-TGCTGTGGAGGGCATCTTTTTCAGCGG-TTCGTTTGCGGCCATCTTCTGGCTCAAG 25950 || ||| || || || ||||| ||| ||| | | ||| ||||| |||||| | || Sbjct 92293 CGCGTGC-GTCGAAGGGATCTTCTTCTCCGGAAGCTTCTGC-GCCATATTCTGGTTGAAA 92350 Query 25951 CAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGT 26010 || ||| ||||| || || ||| ||||||||||| ||| | | |||||||| Sbjct 92351 AAGCGCGGGTTGATGCCTGGTCTCACCTTCTCCAACGAGCTGATCTCCCGTGACGAGGGG 92410 Query 26011 CTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTCTCAA 26070 || || | || || || |||||||| ||||| || | | | || | | | Sbjct 92411 CTGCATTGCGACTTCGCGTGCCTGCTATACAC---CCTCCTAAGGAAGAAGCTGAGTGAG 92467 Query 26071 GAGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNNNNNN 26130 || |||| | | ||| || || || ||||||||||||| |||||| Sbjct 92468 CAGCGCGTCAAGGGGATCGTCCGCGACGCGGTGGAGATCGAGAGGGAGTTCGTGTGCGAC 92527 Query 26131 NNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGA-CTCATGAGCCAATACATTGAGTA 26189 |||| |||||| ||| || |||||||| ||||| |||| Sbjct 92528 GCGCTACCATGCGCGTTGGTGGGGATGAAC-GGAGATCTGATGAGCCAGTACATCGAGTT 92586 Query 26190 TGTGGCCGACCATCTGCTGTGCCAGCTGGGACTCGCCAGACTCTACAGTACGCCTAACCC 26249 |||||||| || || || | | ||| || | |||||| | | ||||| Sbjct 92587 CGTGGCCGATAGGCTCTTGGGCGCGTTCGGATGCGGAAAGATCTACAATGTTCAGAACCC 92646 Query 26250 GTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAGAGGGT 26309 ||| || | ||||| || |||||| ||||||||||||| ||||| ||||||||||| Sbjct 92647 GTTTGATTGGATGGAGCTGATCTCGTTGCAAGGGAAGACCAATTTCTTCGAAAAGAGGGT 92706 Query 26310 CGGCGACTATCA 26321 ||| || || || Sbjct 92707 CGGAGAGTACCA 92718 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 927616367920320