Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Juglans_20regia_20[refseq_20GCF_5F001411555.1_202015-10-22] 105,803 sequences; 699,672,627 total letters Query= NC_019516.1 Length=161440 Score E Sequences producing significant alignments: (Bits) Value seq1861 381 6e-101 seq47040 196 5e-45 seq54963 190 2e-43 seq2016 113 5e-20 >seq1861 Length=68153 Score = 381 bits (422), Expect = 6e-101 Identities = 655/947 (69%), Gaps = 14/947 (1%) Strand=Plus/Plus Query 9815 TTTGACATCCTTGATGACTGGCTTAAACGAGATCGCTTTGTTTTTGTGGGTTGGTCTGGA 9874 ||||| || | ||||||||| | | || | || |||||||| |||||||| || Sbjct 26949 TTTGATATTATGGATGACTGGTTACGGAGGGACCATTTCGTTTTTGTAGGTTGGTCCGGT 27008 Query 9875 CTACTTCTTTTTCCCACTGCTTATCTTGCAATTGGTGGCTGGCTTACTGGCACTACGTTT 9934 ||| | || ||||| ||| ||| |||| | || || ||| |||| || || || ||| Sbjct 27009 CTATTACTCTTTCCTTGTGCCTATTTTGCCTTAGGGGGTTGGTTTACAGGTACAACCTTT 27068 Query 9935 GTCACGAGTTGGTACACTCACGGACTTGCAAGTAGTTACCTTGAGGG-TGCTAATTTCCT 9993 || || | ||| || |||||| | || ||| || | || || ||| || ||| | Sbjct 27069 GTAACTTCATAGTATACACACGGATTGGCGAGTTCCTATTTGGAAGGCTGC-AACTTCTT 27127 Query 9994 TACAGCGGCTGTCTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGG 10053 || || || || || || | ||| || | | | || ||| | | |||| ||||| Sbjct 27128 AACCGCTGCAGTTTCTACTCTCGCTAATAGTTTAGCACACTCTTTGTTGTTACTATGGGG 27187 Query 10054 TCCTGAGTCTCAGGGAGATTTCGTCCGCTGGATCCAGCTTGGGGGACTCTGGGCTTTTGT 10113 ||| || | || |||||||| | ||| || | || | || ||| ||||||| Sbjct 27188 TCCAGAAACACAAGGAGATTTTACTTGTTGGTGTCAATTAGGTAGTCTGTGGACTTTTGT 27247 Query 10114 GGCGCTCCACGGAGCCTTCGCTTTAATCGGCTTTATGTTACGCCAGTTTGAGCTGGCGAG 10173 || ||| ||| |||| || | | |||||| ||||||| || || | Sbjct 27248 TGCTCTCT--GGAC---------TAATAGGTCTCACGTTACGTTAGTTTGAACTTGCTCG 27296 Query 10174 ATTAATTGGAATCCGACCTTACAATGCTATCGCGTTTTCTGGGCCTATTGCTGTTTTTGT 10233 || || | | |||||||| ||||| ||||| || |||| || |||||| ||||| | Sbjct 27297 ATCTGTTCAATTGCGACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTTTTTTTTT 27356 Query 10234 CAGTGTTTTCCTCATCTATCCACTCGGACAGTCTAGTTGGTTCTTTGCGCCGAGTTTCGG 10293 || || || || |||| ||| || || || |||||||||||| ||| || || || Sbjct 27357 TTTGGTATTGCTGATTTATCTACTAGGTCAATCGGGTTGGTTCTTTGTGCCTAGCTTTGG 27416 Query 10294 CGTCGCGGCGATTTTCCGCTTCCTTCTCTTCCTCCAGGGCTTTCATAATTGGACGCTCAA 10353 || || || || || | ||| ||||||| || | || |||||||||||||| | || Sbjct 27417 TGTAGCAGCTATATTTCA-TTCTTTCTCTTTTTCTAAGGGTTTCATAATTGGACATTGAA 27475 Query 10354 TCCCTTCCATATGATGGGAGTTGCTGGTATACTGGGAGGGGCGCTCCTATCAGCAATCCA 10413 || || ||||||||||| ||||||||| || | || | || || |||| | || || Sbjct 27476 CCCATTTCATATGATGGGGGTTGCTGGTGTAATTGGCGCTGCTCTGCTATGCGTTATTCA 27535 Query 10414 CGGAGTCACTGTAGAAAACACACTTTATCAAGATGGCGAACAAGCAAACACTTTCAAAGC 10473 || | || |||||| || | | | ||||||| || ||||| || || || Sbjct 27536 TGGTGCTACCTTAGAAAGTACTTTATTTGAAGATGGTGATGGTGCAAATACATTTTGTGC 27595 Query 10474 TTTTGATAGCACTCAAGAAGAAGAGACCTATTCGATGGTTACTGCTAACCGTTTCTGGTC 10533 |||| | ||||||| ||||| || ||||| ||||| || ||||||| || ||||| Sbjct 27596 TTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAACCACTTTTGGTC 27655 Query 10534 CCAGATATTTGGAATTGCTTTTAGCAATAAACGCTGGCTTCATTTCTTTATGCTGTTTGT 10593 ||| || ||||| || ||||| ||||||||| ||| | |||||| ||||||| ||||| Sbjct 27656 CCAAATCTTTGGGGTTACTTTTTCCAATAAACGTTGGTTACATTTCCTTATGCTATTTGT 27715 Query 10594 ACCTGTTATGGGTCTTTGGACCTCTTCTATTGGAATCATTGGTCTTGCTCTCAATCTTCG 10653 || || | || | |||| | || ||||| | | ||||| ||||| || || || Sbjct 27716 ACTAGTAACCAGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTGGCTCTGAACCTACG 27775 Query 10654 TGCTTACGATTTTGTATCTCAAGAGATCAGGGCGTCAGAAGATCCTGAATTTGAGACGTT 10713 ||| || || ||||| ||||| || ||| | || ||||||||||||||||||||| || Sbjct 27776 TGCCTATGACTTTGTTTCTCAGGAAATCCGTGCAGTAGAAGATCCTGAATTTGAGACTTT 27835 Query 10714 CTATACGAAGAATATCCTTCTGAACGAAGGTCTTCGTGCATGGATGG 10760 ||| || || ||||| ||| | || |||||| ||| ||| ||||||| Sbjct 27836 CTACACAAAAAATATTCTTTTAAATGAAGGTATTCATGCTTGGATGG 27882 >seq47040 Length=8764 Score = 196 bits (216), Expect = 5e-45 Identities = 174/218 (80%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 8632 GTTGCATACTCTGCTCCTGTTGCCGCTGCTTCTGCTGTATTCCTTGTCTATCCTTTTGGT 8691 |||||||| || ||||||||||| |||||| || |||| ||| | ||||||| ||||| Sbjct 5687 GTTGCATATTCAGCTCCTGTTGCAGCTGCTACTACTGTTTTCTTGATCTATCCAATTGGT 5628 Query 8692 CAAGGTTCGTTCTCTGATGGTATGCCTCTTGGTATCTCCGGTACGTTCAACTATATGCTT 8751 ||||| || ||| | |||| |||||| || || || ||||| ||||||| ||| || Sbjct 5627 CAAGGAAGCTTTTCTCACGGTAAGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATT 5568 Query 8752 GTCTTCCAGGCTGAGCACAACATCCTGATGCACCCCTTCCACATGCTTGGTGTTGCTGGT 8811 || ||||||||||||||||||||||| |||||||| || || ||| | ||||| |||||| Sbjct 5567 GTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCATATGTTAGGTGTAGCTGGT 5508 Query 8812 GTCTTCGGCGGATCTCTCTTTTCCGCAATGCATGGTTC 8849 || |||||||| | || ||| || ||||||||||| Sbjct 5507 GTATTCGGCGGCTTCCTATTTAGTGCTATGCATGGTTC 5470 >seq54963 Length=251348 Score = 190 bits (210), Expect = 2e-43 Identities = 173/218 (79%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 8632 GTTGCATACTCTGCTCCTGTTGCCGCTGCTTCTGCTGTATTCCTTGTCTATCCTTTTGGT 8691 |||||||| || |||||||||| |||||| ||||||| || | ||||||| ||||| Sbjct 117193 GTTGCATATTCAGCTCCTGTTGTAGCTGCTACTGCTGTTTTATTGATCTATCCAATTGGT 117252 Query 8692 CAAGGTTCGTTCTCTGATGGTATGCCTCTTGGTATCTCCGGTACGTTCAACTATATGCTT 8751 ||||| || ||||| ||||||||||| || || || ||||| ||||||| ||| || Sbjct 117253 CAAGGAAGCTTTTCTGACGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATT 117312 Query 8752 GTCTTCCAGGCTGAGCACAACATCCTGATGCACCCCTTCCACATGCTTGGTGTTGCTGGT 8811 || ||||||||||||||||||||||| |||||||| || |||||| | |||| |||| Sbjct 117313 GTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTACGTGTAATTGGT 117372 Query 8812 GTCTTCGGCGGATCTCTCTTTTCCGCAATGCATGGTTC 8849 || |||||||| || || ||| | ||||||||||| Sbjct 117373 GTATTCGGCGGCTCCCTATTTAGTGTTATGCATGGTTC 117410 >seq2016 Length=232386 Score = 113 bits (124), Expect = 5e-20 Identities = 112/144 (78%), Gaps = 1/144 (1%) Strand=Plus/Plus Query 8688 TGGTCAAGGTTCGTTCTCTGATGGTATGCCTCTTGGTATCTCCGGTACGTTCAACTATAT 8747 ||||||||| || |||||||||||||||| || | || |||| ||||| | || Sbjct 155472 TGGTCAAGGAAGCTTTTCTGATGGTATGCCTCCAGGAAGTTCGCGTACTTTCAAGTTCAT 155531 Query 8748 GCTTGTCTTCCAGGCTGAGCACAACATCCTGATGCACCCCTTCCACATGCTTGGTGTTGC 8807 | |||| |||||||||||||| ||||| || ||||||| || |||||| | ||||| || Sbjct 155532 GATTGTATTCCAGGCTGAGCAGAACAT-CTTTTGCACCCATTTCACATGTTAGGTGTAGC 155590 Query 8808 TGGTGTCTTCGGCGGATCTCTCTT 8831 |||||| ||| | || || ||||| Sbjct 155591 TGGTGTATTCAGTGGCTCCCTCTT 155614 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515796935832000