Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Juglans_20regia_20[refseq_20GCF_5F001411555.1_202015-10-22] 105,803 sequences; 699,672,627 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq1025 96.9 3e-15 seq1014 96.9 3e-15 seq55116 91.5 1e-13 >seq1025 Length=2429094 Score = 96.9 bits (106), Expect = 3e-15 Identities = 146/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || ||||| |||||||| || || || ||||||||| || || ||| Sbjct 1182601 ATGCAGATCTTTGTGAAAACATTGACTGGGAAGACCATTACCTTGGAGGTCGAGAGTTCT 1182660 Query 28614 GAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | || | || ||||| | || |||||||| ||| | || |||||| Sbjct 1182661 GATACAATTGATAATGTGAAAGCAAAGATTCAG-GACAAAGAAGGAATACCTCCAGATCA 1182719 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||||| |||||||||||||| ||||| | |||||| | ||| |||| ||||| || Sbjct 1182720 GCAGAGGCTTATCTTTGCGGGTAAACAGCTTGAAGATGGAAGGACTCTGGCGGATTACAA 1182779 Query 28733 CATTCAAAAAGAATCTACTCTGCAC 28757 || || || || || ||||||||| Sbjct 1182780 TATACAGAAGGAGTCCACTCTGCAC 1182804 >seq1014 Length=2264649 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 |||||| || ||||| || || || || ||||||||||| || ||| ||| ||| Sbjct 109506 AATGCAGATTTTTGTGAAGACTTTGACTGGTAAAACCATAACTCTCGAGGTTGAAAGTTC 109565 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | | || ||||| ||| || ||||||||||| | || ||| || Sbjct 109566 GGATACAATCGACAATGTCAAGGCAAAGATACAGGACAAAGAGGGCATCCCTCCAGACCA 109625 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 || || ||||||||||| ||||| || | |||||| | ||| | || ||||| || Sbjct 109626 GCAAAGGCTTATCTTTGCAGGCAAGCAGCTAGAAGATGGGAGGACTCTTGCAGATTACAA 109685 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 ||||| || |||||||| || || |||| | | || || || ||||| Sbjct 109686 TATTCAGAAGGAATCTACCCTACATCTGGTGCTGCGCTTGCGTGGTGGGAT 109736 >seq55116 Length=591887 Score = 91.5 bits (100), Expect = 1e-13 Identities = 112/152 (74%), Gaps = 1/152 (1%) Strand=Plus/Minus Query 28632 AAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAACAGAGACTTATCTTTGCG 28691 ||||||||| | ||||| |||||| | ||| ||| || ||||| ||||||||||| Sbjct 230574 AAGCAAAAATACAG-GACAAGGAGGGAATTCCCCCAGACCAGCAGAGGCTTATCTTTGCT 230516 Query 28692 GGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAACATTCAAAAAGAATCTACT 28751 || || ||| | || ||| |||| | || ||||||||||| || |||||||| || Sbjct 230515 GGAAAGCAACTCGAGGATGGCCGAACTCTAGCTGATTATAACATCCAGAAAGAATCCACC 230456 Query 28752 CTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 || ||| |||| || | || |||| ||||| Sbjct 230455 CTCCACTTGGTTCTACGTTTGAGAGGTGGGAT 230424 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424856251544337