Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Juglans_20regia_20[refseq_20GCF_5F001411555.1_202015-10-22] 105,803 sequences; 699,672,627 total letters Query= NC_020486.1 Length=171211 Score E Sequences producing significant alignments: (Bits) Value seq1861 419 3e-112 seq47040 159 4e-34 seq54963 145 8e-30 >seq1861 Length=68153 Score = 419 bits (464), Expect = 3e-112 Identities = 682/977 (70%), Gaps = 16/977 (2%) Strand=Plus/Plus Query 162117 TTTGATGTCCTTGACGACTGGCTTAAAAGAGACCGTTTCGTTTTTGTTGGCTGGTCTGGA 162176 |||||| | | || |||||| | || |||| |||||||||||| || ||||| || Sbjct 26949 TTTGATATTATGGATGACTGGTTACGGAGGGACCATTTCGTTTTTGTAGGTTGGTCCGGT 27008 Query 162177 CTTCTTCTTTTTCCCACTGCTTATCTTGCTCTTGGGGGTTGGCTTACTGGGACTACTTTC 162236 || | || ||||| ||| ||| |||| | ||||||||| |||| || || || || Sbjct 27009 CTATTACTCTTTCCTTGTGCCTATTTTGCCTTAGGGGGTTGGTTTACAGGTACAACCTTT 27068 Query 162237 GTCACGAGTTGGTATACTCACGGACTTGCGAGTTCCTATCTTG-AGGGTGCAAACTTTCT 162295 || || | |||||| |||||| | |||||||||||| | | ||| ||| ||||| | Sbjct 27069 GTAACTTCATAGTATACACACGGATTGGCGAGTTCCTATTTGGAAGGCTGC-AACTTCTT 27127 Query 162296 TACTGCGGCAGTTTCTACTCCAGCAGACGCTATGGGTCATTCTCTTCTGCTTCTATGGGG 162355 || || ||||||||||||| || | | | | || ||| | || | |||||||| Sbjct 27128 AACCGCTGCAGTTTCTACTCTCGCTAATAGTTTAGCACACTCTTTGTTGTTACTATGGGG 27187 Query 162356 TCCTGAGTCTCAAGGGGACTTCATCCGCTGGTGCCAACTTGGGGGACTCTGGACTTTTGT 162415 ||| || | ||||| || || | | ||||| ||| | || | || ||||||||||| Sbjct 27188 TCCAGAAACACAAGGAGATTTTACTTGTTGGTGTCAATTAGGTAGTCTGTGGACTTTTGT 27247 Query 162416 GGCGCTCCACGGAGCCTTTGCACTTATAGGTTTCATGCTTCGCCAGTTTGAACTGGCACG 162475 || ||| || ||| |||||| ||| | | || |||||||||| || || Sbjct 27248 TGCTCTC-----------TGGACTAATAGGTCTCACGTTACGTTAGTTTGAACTTGCTCG 27296 Query 162476 A-CTTATCGGTATTCGTCCTTACAATGCTATTGCTTTCTCAGGTCCTATTGCTGTATTCG 162534 | || || | | || ||||| ||||| || || ||||| | ||| |||||| | || Sbjct 27297 ATCTGTTCAAT-TGCGACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTTTTTTTT 27355 Query 162535 TTAGTGTTTTTCTTATCTATCCTTTGGGACAATCGTCCTGGTTCTTCGCACCGTCGTTCG 162594 || || || || || |||| | || |||||| |||||||| | || || | Sbjct 27356 TTTTGGTATTGCTGATTTATCTACTAGGTCAATCGGGTTGGTTCTTTGTGCCTAGCTTTG 27415 Query 162595 GGGTCGCAGCAATCTTCCGATTCCTGCTCTTCCTCCAAGGGTTCCATAACTGGACGCTAA 162654 | || ||||| || || | |||| | ||||| || ||||||| ||||| ||||| | | Sbjct 27416 GTGTAGCAGCTATATTTC-ATTCTTTCTCTTTTTCTAAGGGTTTCATAATTGGACATTGA 27474 Query 162655 ATCCTTTTCACATGATGGGCGTAGCAGGTATCCTTGGTGGTGCATTGCTCTCTGCTATTC 162714 | || ||||| |||||||| || || ||| | |||| | ||| |||| | | ||||| Sbjct 27475 ACCCATTTCATATGATGGGGGTTGCTGGTGTAATTGGCGCTGCTCTGCTATGCGTTATTC 27534 Query 162715 ATGGAGTGACAGTTGAAAATACACTGTACGAAGATGGCGAACAAGCAAACACTTTTAAAG 162774 |||| | || | |||| ||| | | |||||||| || ||||| || ||| | Sbjct 27535 ATGGTGCTACCTTAGAAAGTACTTTATTTGAAGATGGTGATGGTGCAAATACATTTTGTG 27594 Query 162775 CATTTGACTCCACACAGGAGGAAGAAACGTATTCGATGGTTACTGCGAACCGCTTCTGGT 162834 | ||| || | || || | |||||||| ||||| ||||| || || |||| ||| |||| Sbjct 27595 CTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAACCACTTTTGGT 27654 Query 162835 CACAGATTTTCGGTATTGCTTTTAGTAACAAGCGTTGGTTGCATTTCTTTATGCTCTTTG 162894 | || || || || || ||||| || || |||||||| |||||| ||||||| |||| Sbjct 27655 CCCAAATCTTTGGGGTTACTTTTTCCAATAAACGTTGGTTACATTTCCTTATGCTATTTG 27714 Query 162895 TTCCCGTCATGGGTCTCTGGACAAGTTCTATCGGTATTATTGGACTCGCTCTCAATCTTC 162954 | | || | || | |||| ||| || | || | | || || ||||| || || | Sbjct 27715 TACTAGTAACCAGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTGGCTCTGAACCTAC 27774 Query 162955 GTGCTTACGACTTTGTATCTCAAGAAGTTCGTGCGGCAGAAGACCCTGAGTTTGAGACGT 163014 |||| || |||||||| ||||| ||| | ||||| | |||||| ||||| |||||||| | Sbjct 27775 GTGCCTATGACTTTGTTTCTCAGGAAATCCGTGCAGTAGAAGATCCTGAATTTGAGACTT 27834 Query 163015 TCTATACAAAGAACATTCTTCTGAATGAAGGACTTCGAGCATGGTTAGCACCAGTGGACC 163074 |||| ||||| || |||||| | |||||||| ||| || ||| | | | || | Sbjct 27835 TCTACACAAAAAATATTCTTTTAAATGAAGGTATTCATGCTTGGATGGAGGCTCAAGATC 27894 Query 163075 AACCTCATGAGAACTTT 163091 | |||||||| |||||| Sbjct 27895 AGCCTCATGAAAACTTT 27911 >seq47040 Length=8764 Score = 159 bits (176), Expect = 4e-34 Identities = 166/218 (76%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 161260 GTAGCATACTCTGCTCCTGTCGCTGCAGCGAGTGCAGTGTTCCTGGTCTATCCTTTCGGT 161319 || ||||| || |||||||| || || || | | | || ||| || ||||||| | ||| Sbjct 5687 GTTGCATATTCAGCTCCTGTTGCAGCTGCTACTACTGTTTTCTTGATCTATCCAATTGGT 5628 Query 161320 CAAGGTTCTTTCTCTGATGCAATGCCTCTGGGCATCTCTGGTACGTTCAACTACATGCTT 161379 ||||| || ||| | | | |||||| || || |||||||| ||||||| |||| || Sbjct 5627 CAAGGAAGCTTTTCTCACGGTAAGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATT 5568 Query 161380 GTCTTCCAAGCAGAGCACAACATTCTCATGCACCCCTTCCATATGCTCGGCGTAGCAGGT 161439 || ||||| || ||||||||||| || |||||||| || |||||| | || ||||| ||| Sbjct 5567 GTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCATATGTTAGGTGTAGCTGGT 5508 Query 161440 GTGTTTGGCGGTTCTCTGTTCAGTGCAATGCACGGTTC 161477 || || ||||| | || || ||||| ||||| ||||| Sbjct 5507 GTATTCGGCGGCTTCCTATTTAGTGCTATGCATGGTTC 5470 >seq54963 Length=251348 Score = 145 bits (160), Expect = 8e-30 Identities = 163/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 161260 GTAGCATACTCTGCTCCTGTCGCTGCAGCGAGTGCAGTGTTCCTGGTCTATCCTTTCGGT 161319 || ||||| || |||||||| | || || | ||| || || || ||||||| | ||| Sbjct 117193 GTTGCATATTCAGCTCCTGTTGTAGCTGCTACTGCTGTTTTATTGATCTATCCAATTGGT 117252 Query 161320 CAAGGTTCTTTCTCTGATGCAATGCCTCTGGGCATCTCTGGTACGTTCAACTACATGCTT 161379 ||||| || ||||| | |||||||| || || |||||||| ||||||| |||| || Sbjct 117253 CAAGGAAGCTTTTCTGACGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATT 117312 Query 161380 GTCTTCCAAGCAGAGCACAACATTCTCATGCACCCCTTCCATATGCTCGGCGTAGCAGGT 161439 || ||||| || ||||||||||| || |||||||| || || ||| | | ||| ||| Sbjct 117313 GTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTACGTGTAATTGGT 117372 Query 161440 GTGTTTGGCGGTTCTCTGTTCAGTGCAATGCACGGTTC 161477 || || ||||| || || || |||| ||||| ||||| Sbjct 117373 GTATTCGGCGGCTCCCTATTTAGTGTTATGCATGGTTC 117410 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547022783787480