Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Juglans_20regia_20[refseq_20GCF_5F001411555.1_202015-10-22] 105,803 sequences; 699,672,627 total letters Query= NC_020835.1 Length=47325 Score E Sequences producing significant alignments: (Bits) Value seq47040 145 2e-30 seq54963 125 2e-24 seq2016 100 9e-17 >seq47040 Length=8764 Score = 145 bits (160), Expect = 2e-30 Identities = 168/219 (77%), Gaps = 8/219 (4%) Strand=Plus/Plus Query 18219 CCGTGCATAGCAGCGAATA--AAGCTCCACCGAATACCCCTGCAACACCGAGCATATGGA 18276 || ||||||||| |||| |||| | |||||||| || || ||||| | |||||| | Sbjct 5473 CCATGCATAGCACTAAATAGGAAGC--CGCCGAATACACCAGCTACACCTAACATATGAA 5530 Query 18277 ACGGATGCATAAGGATATTGTGTTCGGCTTGGAATACGAACATGAAATTGAAAGTACCGC 18336 | || ||||||||||| ||||| || || |||||||| | |||||| ||||||||||| Sbjct 5531 ATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCATGAAGTTGAAAGTACCAG 5590 Query 18337 TAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGATA-AACGAGAAAT 18395 ||| || |||||| |||| | ||| || || ||||| |||| ||||| | | ||||| Sbjct 5591 AAATTCCTAGAGGCTTACCGTGAGAAAAGCTTCCTTGACCAATTGGATAGATCAAGAAA- 5649 Query 18396 ACTG-AGAAGGCAGCTGCTACTGGTGCGGAATAAGCAAC 18433 || | || | |||||||| || || || ||||| ||||| Sbjct 5650 ACAGTAGTA-GCAGCTGCAACAGGAGCTGAATATGCAAC 5687 >seq54963 Length=251348 Score = 125 bits (138), Expect = 2e-24 Identities = 159/216 (74%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 18219 CCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACACCGAGCATATGGAAC 18278 || |||||| || |||| | || |||||||| || |||| | ||| || || Sbjct 117407 CCATGCATAACACTAAATAGGGAGCCGCCGAATACACCAATTACACGTAACATGTGAAAT 117348 Query 18279 GGATGCATAAGGATATTGTGTTCGGCTTGGAATACGAACATGAAATTGAAAGTACCGCTA 18338 || ||||||||||| ||||| || || |||||||| | |||||| ||||||||||| | Sbjct 117347 GGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCATGAAGTTGAAAGTACCAGAA 117288 Query 18339 ATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGATAAACGAGAAATACT 18398 || || ||||||||||| ||||| || || ||||| |||| ||||| | | || || Sbjct 117287 ATTCCTAGAGGCATACCGTCAGAAAAGCTTCCTTGACCAATTGGATAGATCAATAAAACA 117228 Query 18399 G-AGAAGGCAGCTGCTACTGGTGCGGAATAAGCAAC 18433 | || | |||||| | || || || ||||| ||||| Sbjct 117227 GCAGTA-GCAGCTACAACAGGAGCTGAATATGCAAC 117193 >seq2016 Length=232386 Score = 100 bits (110), Expect = 9e-17 Identities = 106/136 (78%), Gaps = 3/136 (2%) Strand=Plus/Minus Query 18243 CCACCGAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCG 18302 |||| |||||| || || ||||| | ||| || || || |||| ||| || || || || Sbjct 155605 CCACTGAATACACCAGCTACACCTAACATGTGAAATGGGTGCAAAAG-ATGTTCTGCTCA 155547 Query 18303 GCTTGGAATACGAACATGAAATTGAAAGTACCGCTAA-TACCAAGAGGCATACCATCAGA 18361 || |||||||| | |||||| |||||||||| || || | || |||||||||||||||| Sbjct 155546 GCCTGGAATACAATCATGAACTTGAAAGTAC-GCGAACTTCCTGGAGGCATACCATCAGA 155488 Query 18362 GAAACTCCCTTGTCCA 18377 || || ||||| ||| Sbjct 155487 AAAGCTTCCTTGACCA 155472 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151128281954482