Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Juglans_20regia_20[refseq_20GCF_5F001411555.1_202015-10-22] 105,803 sequences; 699,672,627 total letters Query= NC_020837.1 Length=198013 Score E Sequences producing significant alignments: (Bits) Value seq1861 385 6e-102 seq47040 141 1e-28 seq1548 86.0 8e-12 >seq1861 Length=68153 Score = 385 bits (426), Expect = 6e-102 Identities = 672/976 (69%), Gaps = 14/976 (1%) Strand=Plus/Minus Query 101748 AAAGTTTTCATGCGGTTGATCGACTGGTGCCAACCATGCACGTAGACCTTCATTCAATAG 101807 |||||||||||| || ||||| | ||| ||| ||| | | ||||||||| || || Sbjct 27911 AAAGTTTTCATGAGGCTGATCTTGAGCCTCCATCCAAGCATGAATACCTTCATTTAAAAG 27852 Query 101808 GATGTTCTTTGTGTAGAACGTCTCGAACTCTGGATCTTCTGCTGCTCTGATCTCTTGGGA 101867 || || ||||||||||| ||||| || || ||||||||| |||| | ||| || || || Sbjct 27851 AATATTTTTTGTGTAGAAAGTCTCAAATTCAGGATCTTCTACTGCACGGATTTCCTGAGA 27792 Query 101868 TACAAAGTCATAAGCACGAAGGTTGAGAGCAAGACCAATAATACCGATGGAACTTGTCCA 101927 ||||||||||| ||||| ||||| ||||| ||||| | | || | | ||| |||| Sbjct 27791 AACAAAGTCATAGGCACGTAGGTTCAGAGCCAGACCGACTACTCCAAGAGCACTCATCCA 27732 Query 101928 CAGACCCATAACAGGAACAAAGAGCATAAAGAAATGCAACCACCTCTTATTACTAAATGC 101987 | || | || | ||||| ||||||| |||||| ||||| | ||||| ||| | Sbjct 27731 TAAACTGGTTACTAGTACAAATAGCATAAGGAAATGTAACCAACGTTTATTGGAAAAAGT 27672 Query 101988 AATACCAAAGATTTGAGACCAGAAACGGTTTGCTGTAACCATTGAATAAGTCTCTTCCTC 102047 || ||||||||||| ||||| || |||| || || |||||||||||||| ||||| | Sbjct 27671 AACCCCAAAGATTTGGGACCAAAAGTGGTTAGCGGTGACCATTGAATAAGTTTCTTCAGC 27612 Query 102048 TTGTGTGGAATCGAATGCTTTGAAAGTGTTTGCTTGATCACCATCTTCATACAGAGTGTT 102107 ||| || | | || || || || ||||| ||||||||||||| | | ||| | Sbjct 27611 TTGAGTTGGGTTAAAAGCACAAAATGTATTTGCACCATCACCATCTTCAAATAAAGTACT 27552 Query 102108 CTCCACAGTGACACCGTGGATTGCTGACAGCAGTGCTCCTCCCAGGATACCTGCAACACC 102167 || | || |||| || || | | ||||| || | || | | ||| ||||| || Sbjct 27551 TTCTAAGGTAGCACCATGAATAACGCATAGCAGAGCAGCGCCAATTACACCAGCAACCCC 27492 Query 102168 CATCATATGGAATGGGTTGAGCGTCCAGTTATGGAAGCCCTGTAGGAAGAGTAGGAATCT 102227 ||||||||| |||||||| | ||||| ||||| || || | | ||||| | |||| Sbjct 27491 CATCATATGAAATGGGTTCAATGTCCAATTATGAAACCCTTAGAAAAAGAGAAAGAAT-G 27433 Query 102228 AAATATCGCTGCAACACCAAACGAGGGCGCAAAGAACCAACTGGACTGTCCGAGAGGATA 102287 |||||| ||||| |||||||| ||| |||||||||||| || || || || |||| Sbjct 27432 AAATATAGCTGCTACACCAAAGCTAGGCACAAAGAACCAACCCGATTGACCTAGTAGATA 27373 Query 102288 GATGAGAAACACACTGACAAAAACAGCGATAGGCCCAGAGAACGCAATAGCATTGTACGG 102347 || || || || | ||||| ||| || || ||||||| || || ||||| || || Sbjct 27372 AATCAGCAATACCAAAAAAAAAAAAGCAATTGGAGCAGAGAATGCGATTGCATTATAAGG 27313 Query 102348 ACGAATTCCAATTAACCTAGCCAACTCGAATTGACGAAGCATGAAACCAATGAGGGCAAA 102407 || | | || | | ||| | || || | ||| | | ||| ||| || || || Sbjct 27312 TCGCAATTGAACAGATCGAGCAAGTTCAAACTAACGTAACGTGAGACCTATTAGTCCA-- 27255 Query 102408 TGCACCGTGGAGAGCCACAAAAGCCCAGAGTCCCCCAAGTTGGACCCACCTGACGAAATC 102467 |||||| ||||||| ||| || | || | ||| ||| | ||||| Sbjct 27254 ---------GAGAGCAACAAAAGTCCACAGACTACCTAATTGACACCAACAAGTAAAATC 27204 Query 102468 TCCTTGAGCTTCAGGACCCCAAAGTAGAAGAAGAGAATGACCCATAGAGTCAGCAGGCGT 102527 |||||| | ||| |||||||| |||| | | ||| || | | | | ||| | || Sbjct 27203 TCCTTGTGTTTCTGGACCCCATAGTAACAACAAAGAGTGTGCTAAACTATTAGCGAGAGT 27144 Query 102528 TGACACAGCAGCTGTAAGGAAATTAGCA-CCTTCAAGGTAACTAGACGCAAGCCCGTGGG 102586 || || ||||| || | ||| || ||| ||||| | || | ||| | ||||| | Sbjct 27143 AGAAACTGCAGCGGTTAAGAAGTT-GCAGCCTTCCAAATAGGAACTCGCCAATCCGTGTG 27085 Query 102587 TATACCAGGAAGTAGCAAACGTCGTGCCAGTAAGCCAGCCCCCAATTGCGAGATAAGCAG 102646 ||||| | ||||| |||| || || || |||| ||| ||||| | || | ||| ||| Sbjct 27084 TATACTATGAAGTTACAAAGGTTGTACCTGTAAACCAACCCCCTAAGGCAAAATAGGCAC 27025 Query 102647 TGGGAAAAAGAAGTAGTCCAGACCAACCCACAAAGACAAAGCGATCTCGTTTAATCCAGT 102706 ||||| || | ||| || |||||||| ||||| || || | || | | ||||| Sbjct 27024 AAGGAAAGAGTAATAGACCGGACCAACCTACAAAAACGAAATGGTCCCTCCGTAACCAGT 26965 Query 102707 CATCCAGGATGTCAAA 102722 |||||| || ||||| Sbjct 26964 CATCCATAATATCAAA 26949 >seq47040 Length=8764 Score = 141 bits (156), Expect = 1e-28 Identities = 162/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 103556 GAACCGTGCATAGCACTGAACAGTGAACCACCGAAGACTCCAGCAACGCCCAGCATGTGG 103615 ||||| ||||||||||| || || | || ||||| || ||||| || || | ||| || Sbjct 5470 GAACCATGCATAGCACTAAATAGGAAGCCGCCGAATACACCAGCTACACCTAACATATGA 5529 Query 103616 AAGGGGTGCATGAGAATGTTATGTTCGGCTTGGAAGACCAGCATGTAGTTGAAGGTTCCC 103675 || |||||||| || ||||| || || || ||||| || | |||| ||||||| || || Sbjct 5530 AATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCATGAAGTTGAAAGTACCA 5589 Query 103676 GAAATACCCAAAGGCATAGCATCGGAGAACGAACCTTGACCAAAGGGGTAGACCAAGAAT 103735 ||||| || | |||| || | | || || |||||||||| || |||| |||||| Sbjct 5590 GAAATTCCTAGAGGCTTACCGTGAGAAAAGCTTCCTTGACCAATTGGATAGATCAAGAAA 5649 Query 103736 ACTGCGGACGCAGCCGCAACAGGAGCAGAGTATGCGAC 103773 || | | ||||| ||||||||||| || ||||| || Sbjct 5650 ACAGTAGTAGCAGCTGCAACAGGAGCTGAATATGCAAC 5687 >seq1548 Length=78704 Score = 86.0 bits (94), Expect = 8e-12 Identities = 137/192 (71%), Gaps = 6/192 (3%) Strand=Plus/Minus Query 102820 AGTTGGGTATGCCACGCAGGTCAGAACAAAACCTGCTTCT--AGTTGATCGTCATCCAGA 102877 ||| ||||| | ||| |||||||| ||| | || ||||| | ||| | |||||||||| Sbjct 56112 AGTCGGGTACGACACACAGGTCAGCACATACCC--CTTCTCCATTTGCTTGTCATCCAGA 56055 Query 102878 AAGGATTGATCTTCTTGATCTACAGTACCCGAT-TCAATCTTACCAGCACAAGTAGAACA 102936 || ||| |||| ||| || || | ||||| |||| | | || ||||||||||| || Sbjct 56054 AATGATCCATCTGATTGGTCCACTGATCCCGAAATCAA-CATCCCGGCACAAGTAGAGCA 55996 Query 102937 CGCACCAGCACGACAGGAATAAGGCAGATCAACACCTGCTTCATCAGCAGCGTCTAGAAT 102996 || || || | || || ||||||| || | || || || ||||| | ||| || || Sbjct 55995 GGCCCCGGCCCTGCATGAGTAAGGCAAGTCCAGTCCAGCATCTTCAGCCGAGTCAAGGAT 55936 Query 102997 ATATTGATCATC 103008 || |||||| Sbjct 55935 GTAACAATCATC 55924 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 632675754507240