Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Juglans_20regia_20[refseq_20GCF_5F001411555.1_202015-10-22] 105,803 sequences; 699,672,627 total letters Query= NC_020838.1 Length=45728 Score E Sequences producing significant alignments: (Bits) Value seq47040 129 2e-25 seq54963 123 7e-24 seq2016 82.4 2e-11 >seq47040 Length=8764 Score = 129 bits (142), Expect = 2e-25 Identities = 143/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 21879 CCACCAAATACGCCGGCCACACCCAGCATGTGAAAAGGATGCATAAGAATATTGTGCTCA 21938 || || ||||| || || ||||| | ||| ||||| || |||||||| || ||||||||| Sbjct 5497 CCGCCGAATACACCAGCTACACCTAACATATGAAATGGGTGCATAAGGATGTTGTGCTCA 5556 Query 21939 GCCTGGAACACCAGCATGTAGTTGAAGGTGCCGGATATCCCCAAGGGCATAGCATCAGAA 21998 |||||||| || | |||| ||||||| || || || || || | ||| || | | |||| Sbjct 5557 GCCTGGAATACAATCATGAAGTTGAAAGTACCAGAAATTCCTAGAGGCTTACCGTGAGAA 5616 Query 21999 AAAGAGCCCTGTCCAAACGGATAAACAAGGAACACAGCAGTCGCAGCGGCGACAGGAGCA 22058 || || || |||| ||||| | | ||| |||| ||| ||||| || |||||||| Sbjct 5617 AAGCTTCCTTGACCAATTGGATAGATCAAGAAAACAGTAGTAGCAGCTGCAACAGGAGCT 5676 Query 22059 GAGTACGCAAC 22069 || || ||||| Sbjct 5677 GAATATGCAAC 5687 >seq54963 Length=251348 Score = 123 bits (136), Expect = 7e-24 Identities = 142/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 21879 CCACCAAATACGCCGGCCACACCCAGCATGTGAAAAGGATGCATAAGAATATTGTGCTCA 21938 || || ||||| || |||| | ||||||||| || |||||||| || ||||||||| Sbjct 117383 CCGCCGAATACACCAATTACACGTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCA 117324 Query 21939 GCCTGGAACACCAGCATGTAGTTGAAGGTGCCGGATATCCCCAAGGGCATAGCATCAGAA 21998 |||||||| || | |||| ||||||| || || || || || | |||||| | |||||| Sbjct 117323 GCCTGGAATACAATCATGAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCGTCAGAA 117264 Query 21999 AAAGAGCCCTGTCCAAACGGATAAACAAGGAACACAGCAGTCGCAGCGGCGACAGGAGCA 22058 || || || |||| ||||| | | || |||||||| ||||| | |||||||| Sbjct 117263 AAGCTTCCTTGACCAATTGGATAGATCAATAAAACAGCAGTAGCAGCTACAACAGGAGCT 117204 Query 22059 GAGTACGCAAC 22069 || || ||||| Sbjct 117203 GAATATGCAAC 117193 >seq2016 Length=232386 Score = 82.4 bits (90), Expect = 2e-11 Identities = 92/122 (75%), Gaps = 1/122 (1%) Strand=Plus/Minus Query 21879 CCACCAAATACGCCGGCCACACCCAGCATGTGAAAAGGATGCATAAGAATATTGTGCTCA 21938 |||| ||||| || || ||||| | ||||||||| || |||| |||| | || |||||| Sbjct 155605 CCACTGAATACACCAGCTACACCTAACATGTGAAATGGGTGCAAAAGA-TGTTCTGCTCA 155547 Query 21939 GCCTGGAACACCAGCATGTAGTTGAAGGTGCCGGATATCCCCAAGGGCATAGCATCAGAA 21998 |||||||| || | |||| | ||||| || | || | || |||||| |||||||| Sbjct 155546 GCCTGGAATACAATCATGAACTTGAAAGTACGCGAACTTCCTGGAGGCATACCATCAGAA 155487 Query 21999 AA 22000 || Sbjct 155486 AA 155485 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146024302715340