Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Juglans_20regia_20[refseq_20GCF_5F001411555.1_202015-10-22] 105,803 sequences; 699,672,627 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq1861 253 2e-62 seq47040 120 4e-22 seq54963 116 4e-21 >seq1861 Length=68153 Score = 253 bits (280), Expect = 2e-62 Identities = 635/966 (66%), Gaps = 33/966 (3%) Strand=Plus/Minus Query 122938 CATCCATGCTCTCATGCCTTCATTAAGAAGAATGTTCTTCGTATAGAAAGTCTCGAACTC 122997 |||||| || || |||||||| | |||||| || || || ||||||||||| || || Sbjct 27881 CATCCAAGCATGAATACCTTCATTTAAAAGAATATTTTTTGTGTAGAAAGTCTCAAATTC 27822 Query 122998 TGGGTCTTCTGCTGCTCTTATCTCTTGAGATACAAAGTCGTATGCTCTGAGGTTAAGTGC 123057 || |||||| |||| | || || ||||| |||||||| || || | ||||| || || Sbjct 27821 AGGATCTTCTACTGCACGGATTTCCTGAGAAACAAAGTCATAGGCACGTAGGTTCAGAGC 27762 Query 123058 TAGACCTACGATACCTATAGATGATGTCCACATACCCATGACAGGAACGAACAACATAAG 123117 ||||| || | || | || |||| | || | || | || || | |||||| Sbjct 27761 CAGACCGACTACTCCAAGAGCACTCATCCATAAACTGGTTACTAGTACAAATAGCATAAG 27702 Query 123118 GAAGTGTAAGAATCTTTTGTTAGAAAATGCGATACCAAATATCTGTGACCAGAATCTGTT 123177 ||| ||||| | | ||| || ||||| | | ||||| || || ||||| || ||| Sbjct 27701 GAAATGTAACCAACGTTTATTGGAAAAAGTAACCCCAAAGATTTGGGACCAAAAGTGGTT 27642 Query 123178 CGCTGTAATCATACTATAAGTTTCTTCTTCCTGTGTAGGATCGAATGCTCTGAAAGTTGT 123237 || || | ||| |||||||||||| | || || || | || || | || ||| Sbjct 27641 AGCGGTGACCATTGAATAAGTTTCTTCAGCTTGAGTTGGGTTAAAAGCAC---AAAATGT 27585 Query 123238 AGATTGAATCTTACCTTCAGTATATTGTGATGTGTCTTCATACAATGTGTTCTGCACTGT 123297 | ||| ||| ||| | |||||| | || || | | | || Sbjct 27584 A-TTTG-----CACCATCACCA------------TCTTCAAATAAAGTACTTTCTAAGGT 27543 Query 123298 TGCACCATGAATGGCACATAGTAATGCTCCACCTAGTATTCCTGCAACACCCATCATGTG 123357 ||||||||||| | ||||| | || | || | || || ||||| |||||||| || Sbjct 27542 AGCACCATGAATAACGCATAGCAGAGCAGCGCCAATTACACCAGCAACCCCCATCATATG 27483 Query 123358 AAATGGATTCAATGTAATGTTGTGGAAACCTTGTATGAATAAGATATAACGAAAGATTGC 123417 |||||| |||||||| || || || |||| | || ||| | || |||| || || Sbjct 27482 AAATGGGTTCAATGTCCAATTATGAAACCCTTAGA-AAAAGAGAAAGAATGAAATATAGC 27424 Query 123418 TGCGACACCGAATGATGGTGCGAAGAACCAACTGTGCTGACCTAGTGGATAGATCAGAAA 123477 ||| ||||| || || | |||||||||| ||||||||| |||| ||||| || Sbjct 27423 TGCTACACCAAAGCTAGGCACAAAGAACCAACCCGATTGACCTAGTAGATAAATCAGCAA 27364 Query 123478 GATGCTAGTGAAGACTGCGATAACAGCAGAGAATGCGAGTGCGTTGTAAGGTCTAATGCC 123537 | | || | || || |||||||||||||| ||| || ||||||| | Sbjct 27363 TACCAAAAAAAAAAAAGCAATTGGAGCAGAGAATGCGATTGCATTATAAGGTCGCAATTG 27304 Query 123538 TACAAGTCCTGCGATCTCAAATTGTCTGAGCATGAAACCTATGAGTCCAAAGACTCCATG 123597 ||| || || | ||||| | | | | ||| |||||| |||||| ||| Sbjct 27303 AACAGATCGAGCAAGTTCAAACTAACGTAACGTGAGACCTATTAGTCCAGAGA------- 27251 Query 123598 TAATGCTACAAAGTTCCATAGACCTCCGAGTTGTAACCAACGAACGAATGATCCTTGTGC 123657 || ||||| |||| |||| || | ||| |||||| | || |||||||| Sbjct 27250 ----GCAACAAAAGTCCACAGACTACCTAATTGACACCAACAAGTAAAATCTCCTTGTGT 27195 Query 123658 TTCAGGTCCCCAAAGGAACATGAGACTATGACCCATTGCGTCACCAGGTGTGGAGACTGC 123717 ||| || ||||| || |||| | | || | | | | | | || || ||||| Sbjct 27194 TTCTGGACCCCATAGTAACAACAAAGAGTGTGCTAAACTATTAGCGAGAGTAGAAACTGC 27135 Query 123718 TGCTGTTAAGAAGTTTGCTCCCTCAAGATATGAAGATGCAATACCATGTGTATACCATGA 123777 || ||||||||||| || || | ||| ||| || | || ||||||||| |||| Sbjct 27134 AGCGGTTAAGAAGTTGCAGCCTTCCAAATAGGAACTCGCCAATCCGTGTGTATACTATGA 27075 Query 123778 TGTAACGAAGGTAGTTCCTAAGAACCAACCACCGATTGATAGATACGCACAAGGCAGAAG 123837 || || ||||| || ||| |||||||| || | | | ||| |||||||| | || Sbjct 27074 AGTTACAAAGGTTGTACCTGTAAACCAACCCCCTAAGGCAAAATAGGCACAAGGAAAGAG 27015 Query 123838 TAAAAGACCAGACCATCCTATGAATACAAAACGATCTCTCTTTAACCAGTCGTCAAGAAC 123897 ||| ||||| ||||| |||| || || ||| | || ||| ||||||||| || | || Sbjct 27014 TAATAGACCGGACCAACCTACAAAAACGAAATGGTCCCTCCGTAACCAGTCATCCATAAT 26955 Query 123898 ATCAAA 123903 |||||| Sbjct 26954 ATCAAA 26949 >seq47040 Length=8764 Score = 120 bits (132), Expect = 4e-22 Identities = 158/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 124429 AGAACCATGCATTGCTGAGAATAAAGATCCTCCGAACATTCCTGCTACTCCTGCCATGTG 124488 |||||||||||| || |||| | || ||||| | || ||||| ||| ||| || Sbjct 5469 AGAACCATGCATAGCACTAAATAGGAAGCCGCCGAATACACCAGCTACACCTAACATATG 5528 Query 124489 GAAAGGATGCATTAGAATGTTATGCTCTGCTTGGAAAACGAACATAAAGTTGAAAGTACC 124548 || || ||||| || ||||| ||||| || ||||| || | ||| |||||||||||||| Sbjct 5529 AAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCATGAAGTTGAAAGTACC 5588 Query 124549 TGAGATACCAAGTGGCATACCATCAGAGAATGAACCCTGACCAAATGGGTATACTAAGAA 124608 || || || || ||| |||| | ||| || || ||||||| ||| || | ||||| Sbjct 5589 AGAAATTCCTAGAGGCTTACCGTGAGAAAAGCTTCCTTGACCAATTGGATAGATCAAGAA 5648 Query 124609 TACAGCGAATGCAGCAGATACTGGTGCTGAATAAGCAAC 124647 |||| ||||| | || || |||||||| ||||| Sbjct 5649 AACAGTAGTAGCAGCTGCAACAGGAGCTGAATATGCAAC 5687 >seq54963 Length=251348 Score = 116 bits (128), Expect = 4e-21 Identities = 157/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 124429 AGAACCATGCATTGCTGAGAATAAAGATCCTCCGAACATTCCTGCTACTCCTGCCATGTG 124488 |||||||||||| | |||| || || ||||| | || ||| | | |||||| Sbjct 117411 AGAACCATGCATAACACTAAATAGGGAGCCGCCGAATACACCAATTACACGTAACATGTG 117352 Query 124489 GAAAGGATGCATTAGAATGTTATGCTCTGCTTGGAAAACGAACATAAAGTTGAAAGTACC 124548 || || ||||| || ||||| ||||| || ||||| || | ||| |||||||||||||| Sbjct 117351 AAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCATGAAGTTGAAAGTACC 117292 Query 124549 TGAGATACCAAGTGGCATACCATCAGAGAATGAACCCTGACCAAATGGGTATACTAAGAA 124608 || || || || |||||||| ||||| || || ||||||| ||| || | || || Sbjct 117291 AGAAATTCCTAGAGGCATACCGTCAGAAAAGCTTCCTTGACCAATTGGATAGATCAATAA 117232 Query 124609 TACAGCGAATGCAGCAGATACTGGTGCTGAATAAGCAAC 124647 ||||| ||||| || || |||||||| ||||| Sbjct 117231 AACAGCAGTAGCAGCTACAACAGGAGCTGAATATGCAAC 117193 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578232652903560