Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Juglans_20regia_20[refseq_20GCF_5F001411555.1_202015-10-22] 105,803 sequences; 699,672,627 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq1861 367 2e-96 seq47040 158 2e-33 seq54963 154 2e-32 seq2016 104 3e-17 >seq1861 Length=68153 Score = 367 bits (406), Expect = 2e-96 Identities = 677/987 (69%), Gaps = 18/987 (2%) Strand=Plus/Minus Query 23420 AATTACAGGAAAGTTTTCGTGTGGTTGGTCAATAGTCATCATCCATTCACGGAGGCCATT 23479 |||| || ||||||||| || || || || || | |||||| || | | || | Sbjct 27920 AATTCCATTAAAGTTTTCATGAGGCTGATCTTGAGCCTCCATCCAAGCATGAATACCTTC 27861 Query 23480 GTTCAACAAAATATTTTTCGTGTAGAAGGTCTCATACGAACCATCTTCAGCAGCACGAAT 23539 || || | ||||||||| |||||||| |||||| | | |||||| | ||||| || Sbjct 27860 ATTTAAAAGAATATTTTTTGTGTAGAAAGTCTCAAATTCAGGATCTTCTACTGCACGGAT 27801 Query 23540 CTCTTGACTCACAAAATCATAAGCACGAAGATTAAGAGCAAGCCCAATGATGCCAATAGA 23599 || ||| ||||| ||||| ||||| || || ||||| || || | | |||| || Sbjct 27800 TTCCTGAGAAACAAAGTCATAGGCACGTAGGTTCAGAGCCAGACCGACTACTCCAAGAGC 27741 Query 23600 AGAGACCCAAAGACCCATGACAGGAACAAACAACATAAAGAAGTGCAACCAACGCTTATT 23659 | | ||| | || | || | ||||| | ||||| ||| || |||||||| ||||| Sbjct 27740 ACTCATCCATAAACTGGTTACTAGTACAAATAGCATAAGGAAATGTAACCAACGTTTATT 27681 Query 23660 GCTAAACGCAACCCCGAAGATTTGTGACCAAAAACGATTTGCTGTAACCATCGAATAGGT 23719 | ||| | |||||| |||||||| |||||||| | || || || ||||| ||||| || Sbjct 27680 GGAAAAAGTAACCCCAAAGATTTGGGACCAAAAGTGGTTAGCGGTGACCATTGAATAAGT 27621 Query 23720 CTCCTCCTCCTGAGTGGAATCGAACGCTTTAAAAGTGTTTGCCTGTTCTCCATCTTCATA 23779 || || | ||||| | | || || ||| || ||||| || ||||||||| | Sbjct 27620 TTCTTCAGCTTGAGTTGGGTTAAAAGCACAAAATGTATTTGCACCATCACCATCTTCAAA 27561 Query 23780 CAGTGTATTCTCGACAGTAACTCCATGAATAGCAGAGAGAAGTGCTCCTCCCAGTATACC 23839 | ||| | || | ||| | ||||||||| | | || || || | || | || ||| Sbjct 27560 TAAAGTACTTTCTAAGGTAGCACCATGAATAACGCATAGCAGAGCAGCGCCAATTACACC 27501 Query 23840 AGCAACTCCCATCATATGGAAGGGGTTGAGCGTCCAGTTATGAAAGCCCTGGAGGAAGAG 23899 |||||| ||||||||||| || ||||| | ||||| |||||||| || | || ||||| Sbjct 27500 AGCAACCCCCATCATATGAAATGGGTTCAATGTCCAATTATGAAACCCTTAGAAAAAGAG 27441 Query 23900 AAGGAACCTGAAA-ATCGCCGCAACACCGAAACTCGGCGCAAAGAACCAAGATGACTGTC 23958 || ||| ||||| || || || ||||| || || ||| ||||||||||| || || | Sbjct 27440 AAAGAA--TGAAATATAGCTGCTACACCAAAGCTAGGCACAAAGAACCAACCCGATTGAC 27383 Query 23959 CCAAAGGATAGATGAGGAATACAGACACGAATACAGCAATAGGACCAGAAAAAGCAATCG 24018 | | |||| || || ||||| | | || | |||||| ||| |||| || || || | Sbjct 27382 CTAGTAGATAAATCAGCAATACCAAAAAAAAAAAAGCAATTGGAGCAGAGAATGCGATTG 27323 Query 24019 CATTGTAGGGACGGATTCCAATTAGA-CGTGCCAGTTCAAACTGACGTAACATAAAACCT 24077 |||| || || || | | || ||| || || |||||||||| ||||||| | | |||| Sbjct 27322 CATTATAAGGTCGCAATTGAA-CAGATCGAGCAAGTTCAAACTAACGTAACGTGAGACCT 27264 Query 24078 ATAAGTGCAAAGGCACCGTGGAGAGCAACAAAGGACCAAAGCCCTCCAAGTTGGAGCCAC 24137 || ||| || |||||||||||| | ||| || | || | ||| ||| Sbjct 27263 ATTAGTCCA-----------GAGAGCAACAAAAGTCCACAGACTACCTAATTGACACCAA 27215 Query 24138 CGTTGAAAGTCCCCTTGAGACTCAGGACCCCAAAGTAGAAGAAGAGAATGACCCATAGCG 24197 | ||| || ||||| | || |||||||| |||| | | ||| || | | | Sbjct 27214 CAAGTAAAATCTCCTTGTGTTTCTGGACCCCATAGTAACAACAAAGAGTGTGCTAAACTA 27155 Query 24198 TCAGCAGGCGTCGAGACAGCTGCCGTAAGAAAGTTAGCA-CCCTCAAGATAGGAACTAGC 24256 | ||| | || || || || || || | ||||| ||| || || | ||||||||| || Sbjct 27154 TTAGCGAGAGTAGAAACTGCAGCGGTTAAGAAGTT-GCAGCCTTCCAAATAGGAACTCGC 27096 Query 24257 AAGTCCATGGGTGTACCAACTCGTAACAAAAGCTGTGCCAGTAAGCCAACCGCCAATGGC 24316 | ||| || || ||| | || ||||| | ||| || |||| |||||| || | ||| Sbjct 27095 CAATCCGTGTGTATACTATGAAGTTACAAAGGTTGTACCTGTAAACCAACCCCCTAAGGC 27036 Query 24317 AAGATAAGCAGTGGGAAGAAGTAGGAGTCCAGACCAACCCACAAAGACAAAGCGATCCCG 24376 || ||| ||| |||| |||| || || |||||||| ||||| || || | |||| Sbjct 27035 AAAATAGGCACAAGGAAAGAGTAATAGACCGGACCAACCTACAAAAACGAAATGGTCCCT 26976 Query 24377 TTTAACCCAGTCGTCCAAGATGTCAAA 24403 | |||||| |||| || ||||| Sbjct 26975 CCGTAACCAGTCATCCATAATATCAAA 26949 >seq47040 Length=8764 Score = 158 bits (174), Expect = 2e-33 Identities = 164/215 (76%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 27118 CCGTGCATAGCAGAGAAAAGAGATCCACCGAATACCCCAGCAACACCGAGCATGTGGAAC 27177 || ||||||||| || || | || |||||||| ||||| ||||| | ||| || || Sbjct 5473 CCATGCATAGCACTAAATAGGAAGCCGCCGAATACACCAGCTACACCTAACATATGAAAT 5532 Query 27178 GGGTGCATAAGGATATTGTGTTCTGCCTGGAATACAAGCATGTAGTTAAAAGTACCAGAG 27237 |||||||||||||| ||||| || ||||||||||||| |||| |||| ||||||||||| Sbjct 5533 GGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCATGAAGTTGAAAGTACCAGAA 5592 Query 27238 ATACCAAGAGGCATAGCATCGGAGAAAGAACCTTGACCGAAAGGATAGACGAGGAATACT 27297 || || |||||| || | | || || |||||||| | ||||||| | ||| || Sbjct 5593 ATTCCTAGAGGCTTACCGTGAGAAAAGCTTCCTTGACCAATTGGATAGATCAAGAAAACA 5652 Query 27298 GCACTCGCAGCAGCGACTGGAGCAGAATATGCTAC 27332 | | | ||||| || || ||||| |||||||| || Sbjct 5653 GTAGTAGCAGCTGCAACAGGAGCTGAATATGCAAC 5687 >seq54963 Length=251348 Score = 154 bits (170), Expect = 2e-32 Identities = 163/215 (76%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 27118 CCGTGCATAGCAGAGAAAAGAGATCCACCGAATACCCCAGCAACACCGAGCATGTGGAAC 27177 || |||||| || || || || || |||||||| ||| |||| | |||||| || Sbjct 117407 CCATGCATAACACTAAATAGGGAGCCGCCGAATACACCAATTACACGTAACATGTGAAAT 117348 Query 27178 GGGTGCATAAGGATATTGTGTTCTGCCTGGAATACAAGCATGTAGTTAAAAGTACCAGAG 27237 |||||||||||||| ||||| || ||||||||||||| |||| |||| ||||||||||| Sbjct 117347 GGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCATGAAGTTGAAAGTACCAGAA 117288 Query 27238 ATACCAAGAGGCATAGCATCGGAGAAAGAACCTTGACCGAAAGGATAGACGAGGAATACT 27297 || || ||||||||| | || || || |||||||| | ||||||| | || || Sbjct 117287 ATTCCTAGAGGCATACCGTCAGAAAAGCTTCCTTGACCAATTGGATAGATCAATAAAACA 117228 Query 27298 GCACTCGCAGCAGCGACTGGAGCAGAATATGCTAC 27332 ||| | ||||| | || ||||| |||||||| || Sbjct 117227 GCAGTAGCAGCTACAACAGGAGCTGAATATGCAAC 117193 >seq2016 Length=232386 Score = 104 bits (114), Expect = 3e-17 Identities = 110/144 (76%), Gaps = 1/144 (1%) Strand=Plus/Minus Query 27132 GAAAAGAGATCCACCGAATACCCCAGCAACACCGAGCATGTGGAACGGGTGCATAAGGAT 27191 ||| || || |||| |||||| ||||| ||||| | |||||| || ||||||| ||| || Sbjct 155615 GAAGAGGGAGCCACTGAATACACCAGCTACACCTAACATGTGAAATGGGTGCAAAAG-AT 155557 Query 27192 ATTGTGTTCTGCCTGGAATACAAGCATGTAGTTAAAAGTACCAGAGATACCAAGAGGCAT 27251 || || || ||||||||||||| |||| | || ||||||| || | || ||||||| Sbjct 155556 GTTCTGCTCAGCCTGGAATACAATCATGAACTTGAAAGTACGCGAACTTCCTGGAGGCAT 155497 Query 27252 AGCATCGGAGAAAGAACCTTGACC 27275 | |||| || || |||||||| Sbjct 155496 ACCATCAGAAAAGCTTCCTTGACC 155473 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 664614258699960