Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Juglans_20regia_20[refseq_20GCF_5F001411555.1_202015-10-22] 105,803 sequences; 699,672,627 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq54992 118 1e-21 seq50617 100 3e-16 seq1761 95.1 1e-14 seq51957 91.5 2e-13 seq1889 89.7 6e-13 >seq54992 Length=480207 Score = 118 bits (130), Expect = 1e-21 Identities = 116/150 (77%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 65068 TCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCA 65127 |||||||| |||||| | | || || |||||||| || ||||||||||||||||| Sbjct 460248 TCCTTCGCTGAGCGCATCGTCGCTTTCGCGTGTGTAGAAGGTATCTTCTTCTCCGGAAGC 460189 Query 65128 TTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAAT 65187 |||||||| || | |||||||||||||| || | ||||| || || |||||| || Sbjct 460188 TTCTGCGCCATCTTCTGGTTGAAGAAGCGCGGCTTGATGCCCGGTCTGACCTTCTCCAAC 460129 Query 65188 GAACTTATTTCCCGAGATGAGGGTCTCCAC 65217 || || || || ||||| ||||| |||||| Sbjct 460128 GAGCTGATCTCGCGAGACGAGGGGCTCCAC 460099 >seq50617 Length=115889 Score = 100 bits (110), Expect = 3e-16 Identities = 180/262 (69%), Gaps = 7/262 (3%) Strand=Plus/Plus Query 64957 TACATTAAGGATGGATCTGAAAAGAAGCAGTTATTTGAAGCCATCCAAACTGTACCATGT 65016 ||||| |||||| | ||| ||| | | | || | |||||| | || || || ||| Sbjct 92159 TACATCAAGGATTCAGATGAGAAGCACCGCCTCTTCCATGCCATCGAGACCGTCCCCTGT 92218 Query 65017 ATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGACACAAAGTCTCGC--TCCTTCG 65074 | | |||||||| | ||||| || ||| | ||| | |||| ||||| | Sbjct 92219 GTGGCTAAGAAGGCCCAGTGGGCCCTGCGCTGGATCGAC-----GGCTCGGAGTCCTTTG 92273 Query 65075 CCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCG 65134 | ||||| || | || || ||||| || || || |||||||||||||| ||||||| Sbjct 92274 CGGAGCGTCTCATCGCCTTCGCGTGCGTCGAAGGGATCTTCTTCTCCGGAAGCTTCTGCG 92333 Query 65135 CTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTA 65194 | || | |||||||| ||||| || | ||||| || || |||||| || || || | Sbjct 92334 CCATATTCTGGTTGAAAAAGCGCGGGTTGATGCCTGGTCTCACCTTCTCCAACGAGCTGA 92393 Query 65195 TTTCCCGAGATGAGGGTCTCCA 65216 | ||||| || ||||| || || Sbjct 92394 TCTCCCGTGACGAGGGGCTGCA 92415 >seq1761 Length=289715 Score = 95.1 bits (104), Expect = 1e-14 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 75933 AGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAAGAGCTCAAATC 75992 ||||| |||| |||| ||| || ||||| ||||||||||||| ||||| ||||| Sbjct 163573 AGGATACTTGCAACAGGAAAAGCAACCAGCAGAATTTGGGAACCATCAAATCTTCAAACT 163514 Query 75993 TTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTGTTTGCAATTTGGCAT 76052 | || ||||| || | ||||| ||| | |||||| ||||| |||||| |||||| Sbjct 163513 TATGTACGGAGATAATTGAGTATACAAGTCCAACTGAGACTGCTGTCTGCAATCTGGCAT 163454 Query 76053 CAATCGCCCTTCCAAAGTATGT 76074 |||| || |||||| ||||| Sbjct 163453 CAATTGCTCTTCCACGATATGT 163432 Score = 89.7 bits (98), Expect = 6e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 75128 CGGGACTATGATTTTGGTTACTTTGGTCTCAAAACCCTTGAGAAGAGCTATCT-TCAACG 75186 || |||| ||| | || |||||||||| ||||||||||||||| ||| || | | | Sbjct 164925 CGAGACTTTGACTATGATTACTTTGGTTTCAAAACCCTTGAGAGATCCTACCTATTGAAG 164866 Query 75187 GCTCGATGGCATCCTCATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCAT 75246 | || | || | | | |||| || || ||||||| ||| |||| || | || || Sbjct 164865 G-TCCAAGGAAAGGTTGTAGAAAGACCTCAACACATGTTGATGAGGGTTGCTGTTGGAAT 164807 Query 75247 CCACGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTT 75306 ||| | | ||||||||||||| | | |||||| | | |||||| || | ||| Sbjct 164806 TCACAAGAATGACATTGATTCTGCTATCAAAACATACCATATGATGTCTCAGCGGTGGTT 164747 Query 75307 CATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCA 75354 || ||| || | || ||||| || ||||| || || ||||| || || Sbjct 164746 CACTCATGCGTCTCCCACCCTTTTTAATGCAGGGACTCCAAGGCCTCA 164699 Score = 82.4 bits (90), Expect = 9e-11 Identities = 108/150 (72%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 76127 ATTGTTACCAAAAATCTAAACCGAGTCATTGACAGAAATTTTTATCCCGTTGAGACTGCG 76186 ||||| || || || || ||| | | ||||| |||| || || ||||| ||||| Sbjct 163093 ATTGTAACTAAGAACCTCAACAAAATAATTGATGTTAATTACTACCCTGTTGAAACTGCA 163034 Query 76187 CGAAAGTCTAATATGCGACACAGACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTA 76246 ||| ||| ||| | ||||| |||||||||||| | || || || |||||||| ||| | Sbjct 163033 AGAAGGTCAAATTTTCGACATAGACCTATTGGTATTGGAGTCCAGGGTCTCGCTGATACA 162974 Query 76247 TTTATTTTGTGCCGCTACGCATTTGATTCA 76276 || |||||| || ||||||||||| Sbjct 162973 TTCATTTTGCTTGGCATGCCATTTGATTCA 162944 >seq51957 Length=105213 Score = 91.5 bits (100), Expect = 2e-13 Identities = 164/236 (69%), Gaps = 3/236 (1%) Strand=Plus/Plus Query 75120 ATACGAAGCGGGACTATGATTTTGGTTACTTTGGTCTCAAAACCCTTGAGAAGAGCTATC 75179 |||||| || || | ||| | || |||||||||| ||||||||||||||| | ||| | Sbjct 19438 ATACGAT-CGAGATTTTGACTATGATTACTTTGGTTTCAAAACCCTTGAGAGGTCCTACC 19496 Query 75180 T-TCAACGGCTCGATGGCATCCTCATGGAAACCCCACAGTACATGTTCATGCGGGTCGCA 75238 | | | || || | || | | | |||| || || ||||||| ||| ||||||| Sbjct 19497 TATTGAAGG-TCCAAGGAAAGGTTGTAGAAAGGCCTCAACACATGTTGATGAGGGTCGCG 19555 Query 75239 ATCGGCATCCACGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAA 75298 | || || ||| ||| || ||||| |||| | | | ||||| | | |||||| || Sbjct 19556 GTTGGAATTCACAAGGATGATATTGAGTCTGCCATCAAAACATATCATATGATGTCTCAG 19615 Query 75299 GGTATGTTCATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCA 75354 | ||||| ||| || | || ||||| || ||||| || || ||||| || || Sbjct 19616 CGATGGTTCACTCATGCTTCTCCCACCCTTTTTAATGCAGGGACCCCAAGGCCTCA 19671 >seq1889 Length=778003 Score = 89.7 bits (98), Expect = 6e-13 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 75931 CAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAAGAGCTCAAA 75990 ||||||| ||||||| | ||| ||||||||| ||||| |||| || ||||| |||||| Sbjct 332636 CAAGGATTCTTGTAATAGGAAAAGTAACCAACAGAATCTGGGCACCATCAAAGCCTCAAA 332577 Query 75991 TCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTGTTTGCAATTTGGC 76050 || ||||| || | | |||| | || | | ||| || || |||||||||||||| Sbjct 332576 CCTCTGCACTGAGGTCATTGAGTTCTCAAGTCCGACTGAAACTGCAGTTTGCAATTTGGC 332517 Query 76051 ATCAATCGC 76059 ||| || || Sbjct 332516 ATCCATTGC 332508 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595780614332640