Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Juglans_20regia_20[refseq_20GCF_5F001411555.1_202015-10-22] 105,803 sequences; 699,672,627 total letters Query= NC_020855.1 Length=192497 Score E Sequences producing significant alignments: (Bits) Value seq47040 159 4e-34 seq54963 147 3e-30 >seq47040 Length=8764 Score = 159 bits (176), Expect = 4e-34 Identities = 168/221 (76%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 8269 AAAGAACCGTGCATAGCACTGAAGAGTGATCCACCGAACATACCTGCTACCCCTGCCATA 8328 |||||||| ||||||||||| || || | || ||||| | ||| ||||| ||| |||| Sbjct 5467 AAAGAACCATGCATAGCACTAAATAGGAAGCCGCCGAATACACCAGCTACACCTAACATA 5526 Query 8329 TGGAAAGGATGCATAAGAATGTTATGCTCTGCTTGGAATACGAACATGAAGTTAAACGTA 8388 || || || |||||||| ||||| ||||| || |||||||| | ||||||||| || ||| Sbjct 5527 TGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCATGAAGTTGAAAGTA 5586 Query 8389 CCAGAAATACCTAGAGGCATTCCATCAGAGAATGAACCCTGACCAAATGGATATACTAAG 8448 |||||||| ||||||||| | || | ||| || || ||||||| |||||| | ||| Sbjct 5587 CCAGAAATTCCTAGAGGCTTACCGTGAGAAAAGCTTCCTTGACCAATTGGATAGATCAAG 5646 Query 8449 AACACTGCGAAAGCAGCAGATACTGGAGCACTATATGCTAC 8489 || || | |||||| | || ||||| |||||| || Sbjct 5647 AAAACAGTAGTAGCAGCTGCAACAGGAGCTGAATATGCAAC 5687 >seq54963 Length=251348 Score = 147 bits (162), Expect = 3e-30 Identities = 165/221 (75%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 8269 AAAGAACCGTGCATAGCACTGAAGAGTGATCCACCGAACATACCTGCTACCCCTGCCATA 8328 |||||||| |||||| |||| || || || || ||||| | ||| ||| | | ||| Sbjct 117413 AAAGAACCATGCATAACACTAAATAGGGAGCCGCCGAATACACCAATTACACGTAACATG 117354 Query 8329 TGGAAAGGATGCATAAGAATGTTATGCTCTGCTTGGAATACGAACATGAAGTTAAACGTA 8388 || || || |||||||| ||||| ||||| || |||||||| | ||||||||| || ||| Sbjct 117353 TGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCATGAAGTTGAAAGTA 117294 Query 8389 CCAGAAATACCTAGAGGCATTCCATCAGAGAATGAACCCTGACCAAATGGATATACTAAG 8448 |||||||| ||||||||||| || ||||| || || ||||||| |||||| | || Sbjct 117293 CCAGAAATTCCTAGAGGCATACCGTCAGAAAAGCTTCCTTGACCAATTGGATAGATCAAT 117234 Query 8449 AACACTGCGAAAGCAGCAGATACTGGAGCACTATATGCTAC 8489 || || || |||||| || ||||| |||||| || Sbjct 117233 AAAACAGCAGTAGCAGCTACAACAGGAGCTGAATATGCAAC 117193 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 615047898881160