Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Juglans_20regia_20[refseq_20GCF_5F001411555.1_202015-10-22] 105,803 sequences; 699,672,627 total letters Query= NC_020859.1 Length=175430 Score E Sequences producing significant alignments: (Bits) Value seq1861 363 2e-95 seq47040 136 4e-27 seq54963 118 1e-21 >seq1861 Length=68153 Score = 363 bits (402), Expect = 2e-95 Identities = 673/980 (69%), Gaps = 22/980 (2%) Strand=Plus/Plus Query 167014 TTTGATGTCCTCGATGACTGGCTTAAAAGGGATCGTTTTGTTTTTGTTGGCTGGTCTGGA 167073 |||||| | | ||||||||| | ||||| | ||| |||||||| || ||||| || Sbjct 26949 TTTGATATTATGGATGACTGGTTACGGAGGGACCATTTCGTTTTTGTAGGTTGGTCCGGT 27008 Query 167074 CTTCTTCTTTTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTACTTTC 167133 || | || ||||| ||| ||| |||| | || |||||| |||| || || || || Sbjct 27009 CTATTACTCTTTCCTTGTGCCTATTTTGCCTTAGGGGGTTGGTTTACAGGTACAACCTTT 27068 Query 167134 GTCACGAGTTGGTATACTCATGGACTCGCGTCCAGTT---ATCTTGAGGG-TGCGAACTT 167189 || || | |||||| || ||| | ||| |||| || | || || ||| ||||| Sbjct 27069 GTAACTTCATAGTATACACACGGATTGGCG---AGTTCCTATTTGGAAGGCTGC-AACTT 27124 Query 167190 TCTTACTGCGGCAGTTAGTACTCCAGCAGATTCTATGGGTCATTCTTTACTTCTTCTATG 167249 | || || |||||| ||||| || || | | | || ||||| | | ||||| Sbjct 27125 CTTAACCGCTGCAGTTTCTACTCTCGCTAATAGTTTAGCACACTCTTTGTTGTTACTATG 27184 Query 167250 GGGTCCTGAATCTCAAGGGGATTTCGTCAGGTGGCTCCAACTTGGGGGACTCTGGGCTTT 167309 |||||| ||| | ||||| ||||| | ||| ||| | || | || ||| |||| Sbjct 27185 GGGTCCAGAAACACAAGGAGATTTTACTTGTTGGTGTCAATTAGGTAGTCTGTGGACTTT 27244 Query 167310 TGTGGCGCTCCACGGAGCCTTTGCTCTCATTGGTTTCATGCTTCGACAGTTTGAACTTGC 167369 ||| || ||| ||| || || ||| ||| | | || ||||||||||||| Sbjct 27245 TGTTGCTCTCT--GGA---------CTAATAGGTCTCACGTTACGTTAGTTTGAACTTGC 27293 Query 167370 TCGC-CTGATTGGTATCCGTCCCTACAATGCTATTGCTTTCTCTGGTCCTATTGCTGTCT 167428 ||| ||| | | | || || || ||||| || || ||||||| ||| |||||| | | Sbjct 27294 TCGATCTGTTCAAT-TGCGACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTTTTT 27352 Query 167429 TCGTTAGCGTTTTCCTTCTCTATCCCCTCGGTCAAAGCAGCTGGTTCTTTGCCCCGTCCT 167488 | || || || || | |||| || |||||| | |||||||||| || || Sbjct 27353 TTTTTTTGGTATTGCTGATTTATCTACTAGGTCAATCGGGTTGGTTCTTTGTGCCTAGCT 27412 Query 167489 TCGGAGTCGCCGCCATCTTCCGATTCCTCCTCTTCCTCCAAGGATTCCACAACTGGACAC 167548 | || || || || || || | |||| | ||||| || |||| || || || |||||| Sbjct 27413 TTGGTGTAGCAGCTATATTTC-ATTCTTTCTCTTTTTCTAAGGGTTTCATAATTGGACAT 27471 Query 167549 TGAATCCATTTCATATGATGGGTGTAGCAGGTATCCTGGGTGGTGCATTGCTTTCTGCAA 167608 |||| ||||||||||||||||| || || ||| | | || | ||| |||| | | | Sbjct 27472 TGAACCCATTTCATATGATGGGGGTTGCTGGTGTAATTGGCGCTGCTCTGCTATGCGTTA 27531 Query 167609 TCCATGGTGTTACAGTAGAGAATACTTTGTATGAAGATGGTGAGCAAGCAAACACTTTTA 167668 | ||||||| ||| |||| | |||||| | |||||||||||| ||||| || ||| Sbjct 27532 TTCATGGTGCTACCTTAGAAAGTACTTTATTTGAAGATGGTGATGGTGCAAATACATTTT 27591 Query 167669 AGGCATTCGATTCTACTCAGGAAGAAGAGACTTATTCAATGGTTACAGCAAACCGATTCT 167728 || || | | ||||| | ||||| |||||||||||||| || || |||| || | Sbjct 27592 GTGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAACCACTTTT 27651 Query 167729 GGTCTCAGATCTTCGGCATTGCTTTCAGCAACAAACGCTGGCTTCATTTCTTTATGTTAT 167788 |||| || ||||| || || |||| ||| ||||| ||| | |||||| ||||| ||| Sbjct 27652 GGTCCCAAATCTTTGGGGTTACTTTTTCCAATAAACGTTGGTTACATTTCCTTATGCTAT 27711 Query 167789 TCGTTCCCGTTATGGGACTTTGGACATCATCGATTGGCATCATTGGTCTGGCTCTTAATC 167848 | || | || | | | |||| | |||| | | ||||||||||| || | Sbjct 27712 TTGTACTAGTAACCAGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTGGCTCTGAACC 27771 Query 167849 TTCGTGCTTACGATTTCGTTTCTCAAGAGATCAGAGCGGCGGAGGATCCAGAGTTTGAAA 167908 | ||||| || || || |||||||| || ||| | || | || ||||| || ||||| | Sbjct 27772 TACGTGCCTATGACTTTGTTTCTCAGGAAATCCGTGCAGTAGAAGATCCTGAATTTGAGA 27831 Query 167909 CTTTCTATACTAAAAACATCCTTCTGAATGAAGGTCTTCGAGCATGGTTAGCACCTATCG 167968 ||||||| || ||||| || ||| | ||||||||| ||| || ||| | | || | Sbjct 27832 CTTTCTACACAAAAAATATTCTTTTAAATGAAGGTATTCATGCTTGGATGGAGGCTCAAG 27891 Query 167969 ATCAACCTCATGAGAACTTT 167988 |||| |||||||| |||||| Sbjct 27892 ATCAGCCTCATGAAAACTTT 27911 >seq47040 Length=8764 Score = 136 bits (150), Expect = 4e-27 Identities = 164/223 (74%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 166153 GTTGCTTACTCAGCACCAGTCGCTGCTGCGAGTGCAGTATTCCTAGTATATCCTTTCGGT 166212 ||||| || ||||| || || || ||||| | | | || ||| | | ||||| | ||| Sbjct 5687 GTTGCATATTCAGCTCCTGTTGCAGCTGCTACTACTGTTTTCTTGATCTATCCAATTGGT 5628 Query 166213 CAAGGTAGTTTCTCTGATGCAATGCCACTCGGAATCTCAGGAACATTCAACTACATGTTG 166272 ||||| || || ||| | | | ||| || ||||| || || || ||||||| |||| | Sbjct 5627 CAAGGAAGCTTTTCTCACGGTAAGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATT 5568 Query 166273 GTCTTCCAAGCTGAGCACAATATTCTCATGCATCCCTTCCATATGCTCGGCGTTGCTGGG 166332 || ||||| ||||||||||| || || ||||| || || |||||| | || || ||||| Sbjct 5567 GTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCATATGTTAGGTGTAGCTGGT 5508 Query 166333 GTATTTGGTGGCAGTTTGTTTAGTGCTATGCACGGAAGTTTGG 166375 ||||| || ||| | |||||||||||||| || ||||| Sbjct 5507 GTATTCGGCGGCTTCCTATTTAGTGCTATGCATGGTTCTTTGG 5465 >seq54963 Length=251348 Score = 118 bits (130), Expect = 1e-21 Identities = 160/223 (72%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 166153 GTTGCTTACTCAGCACCAGTCGCTGCTGCGAGTGCAGTATTCCTAGTATATCCTTTCGGT 166212 ||||| || ||||| || || | ||||| | ||| || || | | ||||| | ||| Sbjct 117193 GTTGCATATTCAGCTCCTGTTGTAGCTGCTACTGCTGTTTTATTGATCTATCCAATTGGT 117252 Query 166213 CAAGGTAGTTTCTCTGATGCAATGCCACTCGGAATCTCAGGAACATTCAACTACATGTTG 166272 ||||| || || ||||| | ||||| || ||||| || || || ||||||| |||| | Sbjct 117253 CAAGGAAGCTTTTCTGACGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATT 117312 Query 166273 GTCTTCCAAGCTGAGCACAATATTCTCATGCATCCCTTCCATATGCTCGGCGTTGCTGGG 166332 || ||||| ||||||||||| || || ||||| || || || ||| | | || ||| Sbjct 117313 GTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTACGTGTAATTGGT 117372 Query 166333 GTATTTGGTGGCAGTTTGTTTAGTGCTATGCACGGAAGTTTGG 166375 ||||| || ||| | ||||||| |||||| || ||||| Sbjct 117373 GTATTCGGCGGCTCCCTATTTAGTGTTATGCATGGTTCTTTGG 117415 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 560505728473200