Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Juglans_20regia_20[refseq_20GCF_5F001411555.1_202015-10-22] 105,803 sequences; 699,672,627 total letters Query= NC_020865.1 Length=45730 Score E Sequences producing significant alignments: (Bits) Value seq47040 129 2e-25 seq54963 123 7e-24 seq2016 82.4 2e-11 >seq47040 Length=8764 Score = 129 bits (142), Expect = 2e-25 Identities = 143/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 41618 GTTGCGTACTCTGCTCCTGTCGCCGCTGCGACTGCTGTGTTCCTTGTTTATCCGTTTGGA 41677 ||||| || || |||||||| || ||||| ||| |||| ||| | | ||||| |||| Sbjct 5687 GTTGCATATTCAGCTCCTGTTGCAGCTGCTACTACTGTTTTCTTGATCTATCCAATTGGT 5628 Query 41678 CAGGGCTCTTTTTCTGATGCTATGCCCTTGGGGATATCCGGCACCTTCAACTACATGCTG 41737 || || |||||| | | || ||| | || || || || || ||||||| |||| | Sbjct 5627 CAAGGAAGCTTTTCTCACGGTAAGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATT 5568 Query 41738 GTGTTCCAGGCTGAGCACAATATTCTTATGCATCCTTTTCACATGCTGGGTGTGGCCGGC 41797 || ||||||||||||||||| || |||||||| || ||||| ||| | ||||| || || Sbjct 5567 GTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCATATGTTAGGTGTAGCTGGT 5508 Query 41798 GTATTTGGTGG 41808 ||||| || || Sbjct 5507 GTATTCGGCGG 5497 >seq54963 Length=251348 Score = 123 bits (136), Expect = 7e-24 Identities = 142/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 41618 GTTGCGTACTCTGCTCCTGTCGCCGCTGCGACTGCTGTGTTCCTTGTTTATCCGTTTGGA 41677 ||||| || || |||||||| | ||||| |||||||| || | | ||||| |||| Sbjct 117193 GTTGCATATTCAGCTCCTGTTGTAGCTGCTACTGCTGTTTTATTGATCTATCCAATTGGT 117252 Query 41678 CAGGGCTCTTTTTCTGATGCTATGCCCTTGGGGATATCCGGCACCTTCAACTACATGCTG 41737 || || |||||||| | |||||| | || || || || || ||||||| |||| | Sbjct 117253 CAAGGAAGCTTTTCTGACGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATT 117312 Query 41738 GTGTTCCAGGCTGAGCACAATATTCTTATGCATCCTTTTCACATGCTGGGTGTGGCCGGC 41797 || ||||||||||||||||| || |||||||| || ||||||||| | |||| || Sbjct 117313 GTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTACGTGTAATTGGT 117372 Query 41798 GTATTTGGTGG 41808 ||||| || || Sbjct 117373 GTATTCGGCGG 117383 >seq2016 Length=232386 Score = 82.4 bits (90), Expect = 2e-11 Identities = 92/122 (75%), Gaps = 1/122 (1%) Strand=Plus/Plus Query 41687 TTTTCTGATGCTATGCCCTTGGGGATATCCGGCACCTTCAACTACATGCTGGTGTTCCAG 41746 |||||||||| |||||| || | || | || ||||| | |||| | || |||||| Sbjct 155485 TTTTCTGATGGTATGCCTCCAGGAAGTTCGCGTACTTTCAAGTTCATGATTGTATTCCAG 155544 Query 41747 GCTGAGCACAATATTCTTATGCATCCTTTTCACATGCTGGGTGTGGCCGGCGTATTTGGT 41806 |||||||| || | |||| |||| || ||||||||| | ||||| || || ||||| || Sbjct 155545 GCTGAGCAGAACA-TCTTTTGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCAGT 155603 Query 41807 GG 41808 || Sbjct 155604 GG 155605 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146030694674312