Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Juglans_20regia_20[refseq_20GCF_5F001411555.1_202015-10-22] 105,803 sequences; 699,672,627 total letters Query= NC_020867.1 Length=44892 Score E Sequences producing significant alignments: (Bits) Value seq47040 147 6e-31 seq54963 132 1e-26 seq2016 93.3 1e-14 >seq47040 Length=8764 Score = 147 bits (162), Expect = 6e-31 Identities = 162/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 42673 GTTGCTTACTCTGCCCCTGTGGCTGCAGCGACTGCAGTCTTCCTTGTCTATCCATTTGGG 42732 ||||| || || || ||||| || || || ||| | || ||| | |||||||| |||| Sbjct 5687 GTTGCATATTCAGCTCCTGTTGCAGCTGCTACTACTGTTTTCTTGATCTATCCAATTGGT 5628 Query 42733 CAAGGTTCTTTTTCAGATGGAATGCCTCTTGGCATTTCCGGTACGTTCAACTTCATGTTG 42792 ||||| ||||| | || | |||||| || ||||| ||||| |||||||||||| | Sbjct 5627 CAAGGAAGCTTTTCTCACGGTAAGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATT 5568 Query 42793 GTCTTCCAGGCTGAACATAACATTCTTATGCATCCTTTCCATATGCTTGGTGTTGCCGGC 42852 || ||||||||||| || ||||| |||||||| || || |||||| | ||||| || || Sbjct 5567 GTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCATATGTTAGGTGTAGCTGGT 5508 Query 42853 GTATTTGGTGGGTCGTTGTTCTCAGCTATGCATGGT 42888 ||||| || || | | || |||||||||||| Sbjct 5507 GTATTCGGCGGCTTCCTATTTAGTGCTATGCATGGT 5472 >seq54963 Length=251348 Score = 132 bits (146), Expect = 1e-26 Identities = 159/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 42673 GTTGCTTACTCTGCCCCTGTGGCTGCAGCGACTGCAGTCTTCCTTGTCTATCCATTTGGG 42732 ||||| || || || ||||| | || || ||||| || || | |||||||| |||| Sbjct 117193 GTTGCATATTCAGCTCCTGTTGTAGCTGCTACTGCTGTTTTATTGATCTATCCAATTGGT 117252 Query 42733 CAAGGTTCTTTTTCAGATGGAATGCCTCTTGGCATTTCCGGTACGTTCAACTTCATGTTG 42792 ||||| ||||| || || |||||||| || ||||| ||||| |||||||||||| | Sbjct 117253 CAAGGAAGCTTTTCTGACGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATT 117312 Query 42793 GTCTTCCAGGCTGAACATAACATTCTTATGCATCCTTTCCATATGCTTGGTGTTGCCGGC 42852 || ||||||||||| || ||||| |||||||| || || || ||| | |||| || Sbjct 117313 GTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTACGTGTAATTGGT 117372 Query 42853 GTATTTGGTGGGTCGTTGTTCTCAGCTATGCATGGT 42888 ||||| || || || | || | |||||||||| Sbjct 117373 GTATTCGGCGGCTCCCTATTTAGTGTTATGCATGGT 117408 >seq2016 Length=232386 Score = 93.3 bits (102), Expect = 1e-14 Identities = 104/138 (75%), Gaps = 1/138 (1%) Strand=Plus/Plus Query 42729 TGGGCAAGGTTCTTTTTCAGATGGAATGCCTCTTGGCATTTCCGGTACGTTCAACTTCAT 42788 ||| ||||| ||||| ||||| ||||||| || | ||| |||| ||||| ||||| Sbjct 155472 TGGTCAAGGAAGCTTTTCTGATGGTATGCCTCCAGGAAGTTCGCGTACTTTCAAGTTCAT 155531 Query 42789 GTTGGTCTTCCAGGCTGAACATAACATTCTTATGCATCCTTTCCATATGCTTGGTGTTGC 42848 | | || ||||||||||| || |||| |||| |||| || || || ||| | ||||| || Sbjct 155532 GATTGTATTCCAGGCTGAGCAGAACA-TCTTTTGCACCCATTTCACATGTTAGGTGTAGC 155590 Query 42849 CGGCGTATTTGGTGGGTC 42866 || ||||| |||| || Sbjct 155591 TGGTGTATTCAGTGGCTC 155608 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143352463865044