Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Juglans_20regia_20[refseq_20GCF_5F001411555.1_202015-10-22] 105,803 sequences; 699,672,627 total letters Query= NC_020874.1 Length=46198 Score E Sequences producing significant alignments: (Bits) Value seq47040 118 3e-22 seq54963 105 2e-18 >seq47040 Length=8764 Score = 118 bits (130), Expect = 3e-22 Identities = 160/223 (72%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 26253 CCAAACTTCCGTGCATAGCAGCGAAAAGAGCTCCACCGAAAACCCCAGCAACACCAGCCA 26312 ||||| || ||||||||| || || || ||||| || ||||| ||||| || Sbjct 5465 CCAAAGAACCATGCATAGCACTAAATAGGAAGCCGCCGAATACACCAGCTACACCTAACA 5524 Query 26313 TATGGAATGGGTGCATGAGTATATTATGTTCTGCTTGGAATACGAACATAAAGTTAAAAG 26372 |||| ||||||||||| || || || || || || |||||||| | ||| ||||| |||| Sbjct 5525 TATGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCATGAAGTTGAAAG 5584 Query 26373 TACCAGAGATACCAAGAGGCATTCCATCACTAAAACTCCCTTGTCCGAAAGGATAAACTA 26432 ||||||| || || |||||| | || | | ||| || ||||| || | ||||| | | Sbjct 5585 TACCAGAAATTCCTAGAGGCTTACCGTGAGAAAAGCTTCCTTGACCAATTGGATAGATCA 5644 Query 26433 AGAACACTGCGAGAGCTGCGGATAGTGGTGCTGTATATGCAAC 26475 |||| || | ||| || | | || |||| ||||||||| Sbjct 5645 AGAAAACAGTAGTAGCAGCTGCAACAGGAGCTGAATATGCAAC 5687 >seq54963 Length=251348 Score = 105 bits (116), Expect = 2e-18 Identities = 157/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 26253 CCAAACTTCCGTGCATAGCAGCGAAAAGAGCTCCACCGAAAACCCCAGCAACACCAGCCA 26312 ||||| || |||||| || || || | || ||||| || ||| |||| || Sbjct 117415 CCAAAGAACCATGCATAACACTAAATAGGGAGCCGCCGAATACACCAATTACACGTAACA 117356 Query 26313 TATGGAATGGGTGCATGAGTATATTATGTTCTGCTTGGAATACGAACATAAAGTTAAAAG 26372 | || ||||||||||| || || || || || || |||||||| | ||| ||||| |||| Sbjct 117355 TGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCATGAAGTTGAAAG 117296 Query 26373 TACCAGAGATACCAAGAGGCATTCCATCACTAAAACTCCCTTGTCCGAAAGGATAAACTA 26432 ||||||| || || |||||||| || ||| ||| || ||||| || | ||||| | | Sbjct 117295 TACCAGAAATTCCTAGAGGCATACCGTCAGAAAAGCTTCCTTGACCAATTGGATAGATCA 117236 Query 26433 AGAACACTGCGAGAGCTGCGGATAGTGGTGCTGTATATGCAAC 26475 | || || || ||| || | || |||| ||||||||| Sbjct 117235 ATAAAACAGCAGTAGCAGCTACAACAGGAGCTGAATATGCAAC 117193 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 147526413073760