Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Juglans_20regia_20[refseq_20GCF_5F001411555.1_202015-10-22] 105,803 sequences; 699,672,627 total letters Query= NC_020878.1 Length=44945 Score E Sequences producing significant alignments: (Bits) Value seq47040 129 2e-25 seq54963 116 1e-21 >seq47040 Length=8764 Score = 129 bits (142), Expect = 2e-25 Identities = 162/218 (74%), Gaps = 6/218 (3%) Strand=Plus/Plus Query 40917 CCGTGCATAGCAGCAAACA--AAGCACCACCAAAGACGCCTGCAACGCCGAGCATATGGA 40974 || ||||||||| ||| | |||| | || || || || || || || | |||||| | Sbjct 5473 CCATGCATAGCACTAAATAGGAAGC--CGCCGAATACACCAGCTACACCTAACATATGAA 5530 Query 40975 ATGGGTGCATGAGAATGTTGTGTTCTGCTTGGAAGACAAACATGAAGTTGAATGTTCCAC 41034 |||||||||| || |||||||| || || ||||| |||| |||||||||||| || ||| Sbjct 5531 ATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCATGAAGTTGAAAGTACCAG 5590 Query 41035 TGATTCCTAAAGGCATACCATCAGAGAAAGAACCCTGACCGAATGGATAAACTAAGAATA 41094 ||||||| |||| |||| | ||| || || ||||| | |||||| | ||||| | Sbjct 5591 AAATTCCTAGAGGCTTACCGTGAGAAAAGCTTCCTTGACCAATTGGATAGATCAAGAAAA 5650 Query 41095 CAGCTAG-AGCTGCTGACAATGGAGCTGTGTATGCCAC 41131 ||| ||| ||| |||| | ||||||| ||||| || Sbjct 5651 CAG-TAGTAGCAGCTGCAACAGGAGCTGAATATGCAAC 5687 >seq54963 Length=251348 Score = 116 bits (128), Expect = 1e-21 Identities = 127/166 (77%), Gaps = 2/166 (1%) Strand=Plus/Minus Query 40967 CATATGGAATGGGTGCATGAGAATGTTGTGTTCTGCTTGGAAGACAAACATGAAGTTGAA 41026 ||| || ||||||||||| || |||||||| || || ||||| |||| |||||||||||| Sbjct 117357 CATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCATGAAGTTGAA 117298 Query 41027 TGTTCCACTGATTCCTAAAGGCATACCATCAGAGAAAGAACCCTGACCGAATGGATAAAC 41086 || ||| ||||||| ||||||||| ||||| || || ||||| | |||||| | Sbjct 117297 AGTACCAGAAATTCCTAGAGGCATACCGTCAGAAAAGCTTCCTTGACCAATTGGATAGAT 117238 Query 41087 TAAGAATACAGCTAGAGCTGCTGACAA-TGGAGCTGTGTATGCCAC 41131 || || ||||| ||| ||| |||| ||||||| ||||| || Sbjct 117237 CAATAAAACAGCAGTAGCAGCT-ACAACAGGAGCTGAATATGCAAC 117193 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143521850777802