Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Juglans_20regia_20[refseq_20GCF_5F001411555.1_202015-10-22] 105,803 sequences; 699,672,627 total letters Query= NC_021071.1 Length=177211 Score E Sequences producing significant alignments: (Bits) Value seq47040 183 3e-41 seq54963 170 2e-37 >seq47040 Length=8764 Score = 183 bits (202), Expect = 3e-41 Identities = 172/219 (79%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 67742 AGAACCGTGCATAGCACTAAAGAGTGAACCACCGAATACACCTGCTACTCCAAGCATATG 67801 |||||| |||||||||||||| || | || ||||||||||| ||||| || | |||||| Sbjct 5469 AGAACCATGCATAGCACTAAATAGGAAGCCGCCGAATACACCAGCTACACCTAACATATG 5528 Query 67802 GAATGGGTGCATAAGGATGTTGTGCTCTGCTTGGAACACGAACATGTAGTTAAAAGTACC 67861 |||||||||||||||||||||||||| || ||||| || | |||| |||| |||||||| Sbjct 5529 AAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCATGAAGTTGAAAGTACC 5588 Query 67862 AGAAATACCAAGAGGCATTGCGTCAGAGAAAGAACCTTGACCGAAAGGATAGACCAAGAA 67921 |||||| || |||||| | ||| ||| || |||||||| | ||||||| |||||| Sbjct 5589 AGAAATTCCTAGAGGCTTACCGTGAGAAAAGCTTCCTTGACCAATTGGATAGATCAAGAA 5648 Query 67922 CACAGCGAATGCTGCAGACACTGGAGCAGAGTATGCTAC 67960 |||| || || | || ||||| || ||||| || Sbjct 5649 AACAGTAGTAGCAGCTGCAACAGGAGCTGAATATGCAAC 5687 >seq54963 Length=251348 Score = 170 bits (188), Expect = 2e-37 Identities = 169/219 (77%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 67742 AGAACCGTGCATAGCACTAAAGAGTGAACCACCGAATACACCTGCTACTCCAAGCATATG 67801 |||||| |||||| ||||||| || || || ||||||||||| ||| | | ||| || Sbjct 117411 AGAACCATGCATAACACTAAATAGGGAGCCGCCGAATACACCAATTACACGTAACATGTG 117352 Query 67802 GAATGGGTGCATAAGGATGTTGTGCTCTGCTTGGAACACGAACATGTAGTTAAAAGTACC 67861 |||||||||||||||||||||||||| || ||||| || | |||| |||| |||||||| Sbjct 117351 AAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCATGAAGTTGAAAGTACC 117292 Query 67862 AGAAATACCAAGAGGCATTGCGTCAGAGAAAGAACCTTGACCGAAAGGATAGACCAAGAA 67921 |||||| || |||||||| ||||||| || |||||||| | ||||||| ||| || Sbjct 117291 AGAAATTCCTAGAGGCATACCGTCAGAAAAGCTTCCTTGACCAATTGGATAGATCAATAA 117232 Query 67922 CACAGCGAATGCTGCAGACACTGGAGCAGAGTATGCTAC 67960 ||||| || || || ||||| || ||||| || Sbjct 117231 AACAGCAGTAGCAGCTACAACAGGAGCTGAATATGCAAC 117193 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 566197391067480