Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Juglans_20regia_20[refseq_20GCF_5F001411555.1_202015-10-22] 105,803 sequences; 699,672,627 total letters Query= NC_021072.1 Length=178807 Score E Sequences producing significant alignments: (Bits) Value seq1861 403 2e-107 seq47040 178 1e-39 seq54963 163 3e-35 >seq1861 Length=68153 Score = 403 bits (446), Expect = 2e-107 Identities = 659/942 (70%), Gaps = 18/942 (2%) Strand=Plus/Minus Query 66629 AAAGTTTTCATGCGGTTGATCGATAGGTGCCAACCATGCACGAAGACCTTCATTCAATAG 66688 |||||||||||| || ||||| || ||| ||| ||| ||| ||||||||| || || Sbjct 27911 AAAGTTTTCATGAGGCTGATCTTGAGCCTCCATCCAAGCATGAATACCTTCATTTAAAAG 27852 Query 66689 AATGTTCTTTGTGTAGAACGTCTCGAACTCTGGGTCTTCTGCTGCTCTGATCTCTTGGGA 66748 ||| || ||||||||||| ||||| || || || |||||| |||| | ||| || || || Sbjct 27851 AATATTTTTTGTGTAGAAAGTCTCAAATTCAGGATCTTCTACTGCACGGATTTCCTGAGA 27792 Query 66749 TACAAAGTCATAAGCACGAAGGTTGAGAGCAAGACCAATAATACCGATGGAACTTGTCCA 66808 ||||||||||| ||||| ||||| ||||| ||||| | | || | | ||| |||| Sbjct 27791 AACAAAGTCATAGGCACGTAGGTTCAGAGCCAGACCGACTACTCCAAGAGCACTCATCCA 27732 Query 66809 AAGACCCATAACAGGAACAAACAACATAAAGAAATGCAACCACCTCTTATTGCTAAACGC 66868 | || | || | ||||| | ||||| |||||| ||||| | |||||| ||| | Sbjct 27731 TAAACTGGTTACTAGTACAAATAGCATAAGGAAATGTAACCAACGTTTATTGGAAAAAGT 27672 Query 66869 AATACCAAAGATCTGAGACCAGAAGCGGTTTGCAGTAACCATTGAGTAAGTTTCTTCCTC 66928 || |||||||| || ||||| ||| |||| || || |||||||| ||||||||||| | Sbjct 27671 AACCCCAAAGATTTGGGACCAAAAGTGGTTAGCGGTGACCATTGAATAAGTTTCTTCAGC 27612 Query 66929 TTGAGTAGAGTCGAATGCTTTGAAAGTGTTTGCTTGTTCACCATCTTCATACAGAGTATT 66988 |||||| | || || || || || ||||| |||||||||||| | | |||| | Sbjct 27611 TTGAGTTGGGTTAAAAGCACAAAATGTATTTGCACCATCACCATCTTCAAATAAAGTACT 27552 Query 66989 CTCTACTGTAACACCATGAATGGCAGAAAGCAATGCACCACCCAGGATACCTGCTACACC 67048 |||| ||| |||||||||| | | |||| ||| | || | | ||| || || || Sbjct 27551 TTCTAAGGTAGCACCATGAATAACGCATAGCAGAGCAGCGCCAATTACACCAGCAACCCC 27492 Query 67049 CATCATATGAAACGGGTTCAAGGTCCAGTTATGGAATCCTTGTAGGAAGAGAAGGAATCG 67108 |||||||||||| |||||||| ||||| ||||| || |||| | ||||||| |||| | Sbjct 27491 CATCATATGAAATGGGTTCAATGTCCAATTATGAAACCCTTAGAAAAAGAGAAAGAAT-G 27433 Query 67109 AAAGATTGCTGAGACCCCGAAAGAT-GGAGCGAAAAACCAACTCGATTGACCCAGAGGGT 67167 ||| || |||| || || |||| | || | || ||||||| ||||||||| || | | Sbjct 27432 AAATATAGCTGCTACACC-AAAGCTAGGCACAAAGAACCAACCCGATTGACCTAGTAGAT 27374 Query 67168 AGATGAGAAAGACACTAACAAAAACAGCGATAGGACCAGAGAACGCAATAGCATTGTAGG 67227 | || || || || || ||||| ||| || ||| ||||||| || || ||||| || | Sbjct 27373 AAATCAGCAATACCAAAAAAAAAAAAGCAATTGGAGCAGAGAATGCGATTGCATTATAAG 27314 Query 67228 GACGGATACCGATGAGA-CGTGCCAGTTCAAACTGGCGAAGCATGAAACCAATTAGAGCG 67286 | || | | || ||| || || |||||||||| || | | ||| ||| ||||| | Sbjct 27313 GTCGCA-ATTGAACAGATCGAGCAAGTTCAAACTAACGTAACGTGAGACCTATTAGTCC- 27256 Query 67287 AAAGCCCCGTGGAGCGCCACAAAATTCCAGAGTCCTCCAAGTTGGATCCAGCGGACGAAA 67346 ||| || |||||| |||| || | || | ||| ||| | ||| Sbjct 27255 ----------AGAGAGCAACAAAAGTCCACAGACTACCTAATTGACACCAACAAGTAAAA 27206 Query 67347 TCCCCCTGAGACTCAGGACCCCAAAGTAGAAGAAGAGAATGACCCATAGCATCAGCAGGC 67406 || || || | || |||||||| |||| | | ||| || | | | || ||| | Sbjct 27205 TCTCCTTGTGTTTCTGGACCCCATAGTAACAACAAAGAGTGTGCTAAACTATTAGCGAGA 27146 Query 67407 GTTGACACAGCCGCTGTGAGAAAATTAGCA-CCCTCAAGATAACTAGACGCGAGTCCGTG 67465 || || || || || || | | || | ||| || || | ||| | ||| | |||||| Sbjct 27145 GTAGAAACTGCAGCGGTTA-AGAAGTTGCAGCCTTCCAAATAGGAACTCGCCAATCCGTG 27087 Query 67466 AGTGTACCAGCTTGTGACAAACGTAGTACCAGTAAGCCAGCCACCAATTGCCATATAAGC 67525 || ||| | || ||||| || ||||| |||| ||| || || | || | ||| || Sbjct 27086 TGTATACTATGAAGTTACAAAGGTTGTACCTGTAAACCAACCCCCTAAGGCAAAATAGGC 27027 Query 67526 AGTGGGAAAAAGAAGTAGTCCAGACCAACCCACAAAGACAAA 67567 | ||||| || | ||| || |||||||| ||||| || || Sbjct 27026 ACAAGGAAAGAGTAATAGACCGGACCAACCTACAAAAACGAA 26985 >seq47040 Length=8764 Score = 178 bits (196), Expect = 1e-39 Identities = 170/218 (78%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 68224 GAACCATGCATTGCACTGAACAGAGATCCACCAAATACGCCAGCAACGCCGAGCATATGG 68283 ||||||||||| ||||| || || | || || ||||| ||||| || || | |||||| Sbjct 5470 GAACCATGCATAGCACTAAATAGGAAGCCGCCGAATACACCAGCTACACCTAACATATGA 5529 Query 68284 AAGGGGTGCATCAGGATGTTGTGCTCTGCTTGGAACACCAGCATGTAGTTGAAAGTACCA 68343 || |||||||| |||||||||||||| || ||||| || | |||| |||||||||||||| Sbjct 5530 AATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCATGAAGTTGAAAGTACCA 5589 Query 68344 GAAATGCCGAGAGGCATTGCGTCAGAGAACGAACCTTGACCGAAAGGATAGACCAGGAAG 68403 ||||| || |||||| | ||| ||| || |||||||| | ||||||| || ||| Sbjct 5590 GAAATTCCTAGAGGCTTACCGTGAGAAAAGCTTCCTTGACCAATTGGATAGATCAAGAAA 5649 Query 68404 ACTGCGGATGCTGCTGCAACAGGTGCAGAGTATGCAAC 68441 || | | || ||||||||||| || || |||||||| Sbjct 5650 ACAGTAGTAGCAGCTGCAACAGGAGCTGAATATGCAAC 5687 >seq54963 Length=251348 Score = 163 bits (180), Expect = 3e-35 Identities = 167/218 (77%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 68224 GAACCATGCATTGCACTGAACAGAGATCCACCAAATACGCCAGCAACGCCGAGCATATGG 68283 ||||||||||| |||| || || || || || ||||| ||| || | | ||| || Sbjct 117410 GAACCATGCATAACACTAAATAGGGAGCCGCCGAATACACCAATTACACGTAACATGTGA 117351 Query 68284 AAGGGGTGCATCAGGATGTTGTGCTCTGCTTGGAACACCAGCATGTAGTTGAAAGTACCA 68343 || |||||||| |||||||||||||| || ||||| || | |||| |||||||||||||| Sbjct 117350 AATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCATGAAGTTGAAAGTACCA 117291 Query 68344 GAAATGCCGAGAGGCATTGCGTCAGAGAACGAACCTTGACCGAAAGGATAGACCAGGAAG 68403 ||||| || |||||||| ||||||| || |||||||| | ||||||| || || Sbjct 117290 GAAATTCCTAGAGGCATACCGTCAGAAAAGCTTCCTTGACCAATTGGATAGATCAATAAA 117231 Query 68404 ACTGCGGATGCTGCTGCAACAGGTGCAGAGTATGCAAC 68441 || || | || ||| ||||||| || || |||||||| Sbjct 117230 ACAGCAGTAGCAGCTACAACAGGAGCTGAATATGCAAC 117193 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571297836603960