Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Juglans_20regia_20[refseq_20GCF_5F001411555.1_202015-10-22]
105,803 sequences; 699,672,627 total letters
Query= NC_021246.1
Length=281182
Score E
Sequences producing significant alignments: (Bits) Value
seq55116 140 6e-28
seq1014 123 4e-23
seq1025 113 8e-20
seq1868 109 1e-18
>seq55116
Length=591887
Score = 140 bits (154), Expect = 6e-28
Identities = 169/230 (73%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190
|||||||| || | || || ||||| || | ||||| ||| || ||||||||| ||
Sbjct 230196 ATACCACCCCTAAGGCGGAGAACCAGGTGGAGTGTAGACTCCTTCTGAATATTATAATCA 230255
Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250
| || |||| ||| || | || ||||| |||||||| | ||||| ||||| ||
Sbjct 230256 GCCAAAGTTCGGCCATCCTCGAGCTGCTTTCCCGCAAAAATCAGCCTCTGCTGATCTGGG 230315
Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310
|| ||||||||||| || || ||||| | || | || ||| || |||||| ||||
Sbjct 230316 GGAATTCCTTCTTTGTCCTGAATTTTTGCCTTCACGTTATCAATGGTGTCGGAACTCTCA 230375
Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
||||| ||||| ||||| || || || |||||||| ||||| || |||||
Sbjct 230376 ACTTCAAGAGTAATAGTCTTTCCGGTGAGCGTTTTGACAAAAATCTGCAT 230425
Score = 114 bits (126), Expect = 2e-20
Identities = 153/213 (72%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 193149 AGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCG 193208
|| |||| ||| | |||| |||||| || || || || | || || || |||
Sbjct 229758 AGGACCAAATGAAGAGTAGACTCTTTCTGGATGTTGTAATCAGCCAATGTCCTGCCATCC 229817
Query 193209 TCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCT 193268
|| | ||| ||||| ||||| || || ||||| || || ||||| || ||||| |||||
Sbjct 229818 TCAAGTTGCTTTCCAGCAAATATCAACCTCTGCTGGTCGGGAGGAATGCCTTCCTTATCC 229877
Query 193269 TGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTT 193328
|| ||||| | || | ||| ||| ||||| || |||||| || |||||||||||
Sbjct 229878 TGAATTTTCGCCTTCACATTGTCAATTGTATCAGAGCTCTCAACCTCCAGAGTTATAGTC 229937
Query 193329 TTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361
|| || || || || || ||||| |||||||||
Sbjct 229938 TTTCCAGTAAGGGTCTTGACAAAGATTTGCATT 229970
Score = 104 bits (114), Expect = 4e-17
Identities = 161/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190
|| ||||||||||| || || |||| || | || | ||||| || ||||| ||
Sbjct 230424 ATCCCACCTCTCAAACGTAGAACCAAGTGGAGGGTGGATTCTTTCTGGATGTTATAATCA 230483
Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250
| || |||| ||| || | ||| ||||| ||||| || | ||||| || || ||
Sbjct 230484 GCTAGAGTTCGGCCATCCTCGAGTTGCTTTCCAGCAAAGATAAGCCTCTGCTGGTCTGGG 230543
Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310
|| ||||| || || || |||||||| | ||| | || ||||||||| || |||
Sbjct 230544 GGAATTCCCTCCTTGTCCTGTATTTTTGCTTTGACGTTATCAATAGTATCAGAGCTCTCC 230603
Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
|| || |||||||| || || || || || || || ||||| || |||||
Sbjct 230604 ACCTCGAGAGTTATGGTCTTTCCAGTAAGAGTCTTGACAAAGATCTGCAT 230653
Score = 86.0 bits (94), Expect = 1e-11
Identities = 107/147 (73%), Gaps = 0/147 (0%)
Strand=Plus/Plus
Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274
|| ||||| ||||| || | ||||| |||||||| || || || || || ||||| ||
Sbjct 229368 TGCTTTCCTGCAAAGATGAGCCTCTGCTGATCAGGTGGGATCCCCTCCTTGTCTTGAATC 229427
Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334
|| | ||| | ||| ||| ||||| ||| || || || || || || || || ||
Sbjct 229428 TTAGCTTTCACATTGTCAATGGTATCAGAACTTTCCACCTCAAGTGTGATTGTCTTGCCC 229487
Query 193335 GTTAGCGTTTTTACAAATATTTGCATT 193361
|| ||||| || || ||||||||||||
Sbjct 229488 GTCAGCGTCTTCACGAATATTTGCATT 229514
>seq1014
Length=2264649
Score = 123 bits (136), Expect = 4e-23
Identities = 166/231 (72%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190
|| ||||| | || ||||| |||| ||||| || | ||| || ||| ||||||||
Sbjct 109280 ATTCCACCACGCAGCCGAAGCACCAAGTGCAAGGTGGACTCCTTCTGAATGTTATAGTCA 109221
Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250
| | || || ||| |||| ||| || || |||||||| || ||||| || || ||
Sbjct 109220 GCAAGAGTCCTTCCATCTTCTAGTTGCTTCCCAGCAAAAATCAACCTCTGCTGGTCTGGT 109161
Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310
|| ||||| || || || || || || | || | ||| |||||||| || |||
Sbjct 109160 GGGATTCCCTCCTTGTCCTGAATCTTTGCCTTCACATTGTCTATAGTATCCGAGCTTTCA 109101
Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361
||||| | ||||||||||| ||||| ||||| || ||||| |||||||||
Sbjct 109100 ACTTCCAAGGTTATAGTTTTTCCTGTCAGCGTCTTCACAAAAATTTGCATT 109050
Score = 120 bits (132), Expect = 5e-22
Identities = 165/231 (71%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190
|| || || | ||| || || |||| |||| ||| | || || ||||| || ||
Sbjct 109508 ATTCCGCCACGCAAACGCAGCACCAAGTGCAGTGTCGATTCCTTTTGGATATTGTAATCT 109449
Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250
| ||| || || ||| ||||| || || || |||||||| || ||||| || |||||
Sbjct 109448 GCTAAGGTCCTTCCATCTTCTAACTGCTTGCCAGCAAAAATCAACCTCTGCTGGTCAGGT 109389
Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310
|| || |||||||| ||||| ||||| | || | ||| ||||||||||||| ||||
Sbjct 109388 GGGATACCTTCTTTGTCTTGAATTTTAGCCTTCACATTATCAATAGTATCGGAACTCTCA 109329
Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361
|| || | ||| || ||||| || || | || || || || || ||||||
Sbjct 109328 ACCTCCAAAGTAATGGTTTTTCCAGTCAAGGTCTTAACGAAAATCTGCATT 109278
Score = 86.0 bits (94), Expect = 1e-11
Identities = 128/182 (70%), Gaps = 0/182 (0%)
Strand=Plus/Minus
Query 193179 ATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTC 193238
||||||||||||| | || | | || || | ||| || || ||||| || || |||
Sbjct 109004 ATATTATAGTCGGCAAGTGTCCGACCGTCTTCAAGTTGCTTGCCAGCAAAGATCAACCTC 108945
Query 193239 TGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTA 193298
||||| || || || || || || || ||||| || || | || | ||| ||| ||
Sbjct 108944 TGTTGGTCTGGTGGGATACCCTCCTTGTCTTGGATCTTAGCCTTGACATTATCAATGGTG 108885
Query 193299 TCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGC 193358
|| || || ||||| | |||||| ||||| || || | ||||| ||||| ||||||
Sbjct 108884 TCCGAGCTTTCGACTTCCAAAGTTATGGTTTTTCCCGTCAAGGTTTTAACAAAGATTTGC 108825
Query 193359 AT 193360
||
Sbjct 108824 AT 108823
>seq1025
Length=2429094
Score = 113 bits (124), Expect = 8e-20
Identities = 154/215 (72%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205
||||| |||| |||||| || | ||| || ||| || || |||| ||| || || |
Sbjct 1182131 CGAAGCACCAAATGCAAGGTGGACTCCTTCTGAATGTTGTAATCGGCTAATGTCCTTCCA 1182072
Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265
|| |||||||| || || ||||| || || ||||| ||||| || || || || || ||
Sbjct 1182071 TCTTCTAATTGCTTCCCAGCAAAGATCAACCTCTGCTGATCCGGTGGGATACCCTCCTTG 1182012
Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325
||||| || || | || | ||| || ||||| || |||||||| | ||||||
Sbjct 1182011 TCTTGGATCTTTGCCTTGACATTATCTATGGTATCCGAGCTTTCAACTTCCAAGGTTATA 1181952
Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
||||| || || | || || ||||| ||||||||
Sbjct 1181951 GTTTTTCCCGTCAAGGTCTTCACAAAGATTTGCAT 1181917
Score = 93.3 bits (102), Expect = 8e-14
Identities = 161/234 (69%), Gaps = 0/234 (0%)
Strand=Plus/Minus
Query 193127 TTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATA 193186
||| | |||||| | | ||||| || || |||| || | ||| || ||||| ||
Sbjct 1182834 TTAGAAACCACCACGGAGGCGAAGAACAAGGTGCAGAGTGGACTCCTTCTGTATATTGTA 1182775
Query 193187 GTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATC 193246
|| | | || || ||| || | ||||| || ||||| || | ||||| |||||
Sbjct 1182774 ATCCGCCAGAGTCCTTCCATCTTCAAGCTGTTTACCCGCAAAGATAAGCCTCTGCTGATC 1182715
Query 193247 AGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGA 193306
||||||||||||||||| || || || || | ||| | ||| ||| ||||| |||
Sbjct 1182714 TGGAGGTATTCCTTCTTTGTCCTGAATCTTTGCTTTCACATTATCAATTGTATCAGAACT 1182655
Query 193307 CTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
||| || || | || || || || || || | ||||| ||||| || |||||
Sbjct 1182654 CTCGACCTCCAAGGTAATGGTCTTCCCAGTCAATGTTTTCACAAAGATCTGCAT 1182601
>seq1868
Length=298818
Score = 109 bits (120), Expect = 1e-18
Identities = 162/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190
|| || || |||||||| || ||||| ||||| || | ||| || || || || |||
Sbjct 224384 ATCCCTCCCCTCAATCGGAGCACCAGGTGCAAAGTCGACTCCTTCTGTATGTTGTAATCG 224325
Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250
| | || | ||| || ||||| || ||||| || || | ||||| |||||||||
Sbjct 224324 GCGAGGGTACGCCCATCCTCCAATTGCTTCCCGGCGAAGATGAGCCTCTGCTGATCAGGA 224265
Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310
|| || ||||| || ||||| || |||| |||| || || ||||||||| |||
Sbjct 224264 GGAATGCCTTCCTTGTCTTGGATCTTGGCCTTTACGTTGTCGATGGTATCGGAACTCTCG 224205
Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
|| || || || || || || || || || ||||| || || || |||||
Sbjct 224204 ACCTCGAGGGTGATGGTCTTCCCGGTGAGGGTTTTGACGAAGATCTGCAT 224155
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 898464573318960
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