Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Juglans_20regia_20[refseq_20GCF_5F001411555.1_202015-10-22] 105,803 sequences; 699,672,627 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq55116 140 6e-28 seq1014 123 4e-23 seq1025 113 8e-20 seq1868 109 1e-18 >seq55116 Length=591887 Score = 140 bits (154), Expect = 6e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 |||||||| || | || || ||||| || | ||||| ||| || ||||||||| || Sbjct 230196 ATACCACCCCTAAGGCGGAGAACCAGGTGGAGTGTAGACTCCTTCTGAATATTATAATCA 230255 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | || |||| ||| || | || ||||| |||||||| | ||||| ||||| || Sbjct 230256 GCCAAAGTTCGGCCATCCTCGAGCTGCTTTCCCGCAAAAATCAGCCTCTGCTGATCTGGG 230315 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || ||||||||||| || || ||||| | || | || ||| || |||||| |||| Sbjct 230316 GGAATTCCTTCTTTGTCCTGAATTTTTGCCTTCACGTTATCAATGGTGTCGGAACTCTCA 230375 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| ||||| ||||| || || || |||||||| ||||| || ||||| Sbjct 230376 ACTTCAAGAGTAATAGTCTTTCCGGTGAGCGTTTTGACAAAAATCTGCAT 230425 Score = 114 bits (126), Expect = 2e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 193149 AGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCG 193208 || |||| ||| | |||| |||||| || || || || | || || || ||| Sbjct 229758 AGGACCAAATGAAGAGTAGACTCTTTCTGGATGTTGTAATCAGCCAATGTCCTGCCATCC 229817 Query 193209 TCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCT 193268 || | ||| ||||| ||||| || || ||||| || || ||||| || ||||| ||||| Sbjct 229818 TCAAGTTGCTTTCCAGCAAATATCAACCTCTGCTGGTCGGGAGGAATGCCTTCCTTATCC 229877 Query 193269 TGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTT 193328 || ||||| | || | ||| ||| ||||| || |||||| || ||||||||||| Sbjct 229878 TGAATTTTCGCCTTCACATTGTCAATTGTATCAGAGCTCTCAACCTCCAGAGTTATAGTC 229937 Query 193329 TTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 || || || || || || ||||| ||||||||| Sbjct 229938 TTTCCAGTAAGGGTCTTGACAAAGATTTGCATT 229970 Score = 104 bits (114), Expect = 4e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || ||||||||||| || || |||| || | || | ||||| || ||||| || Sbjct 230424 ATCCCACCTCTCAAACGTAGAACCAAGTGGAGGGTGGATTCTTTCTGGATGTTATAATCA 230483 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | || |||| ||| || | ||| ||||| ||||| || | ||||| || || || Sbjct 230484 GCTAGAGTTCGGCCATCCTCGAGTTGCTTTCCAGCAAAGATAAGCCTCTGCTGGTCTGGG 230543 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || ||||| || || || |||||||| | ||| | || ||||||||| || ||| Sbjct 230544 GGAATTCCCTCCTTGTCCTGTATTTTTGCTTTGACGTTATCAATAGTATCAGAGCTCTCC 230603 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || |||||||| || || || || || || || ||||| || ||||| Sbjct 230604 ACCTCGAGAGTTATGGTCTTTCCAGTAAGAGTCTTGACAAAGATCTGCAT 230653 Score = 86.0 bits (94), Expect = 1e-11 Identities = 107/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274 || ||||| ||||| || | ||||| |||||||| || || || || || ||||| || Sbjct 229368 TGCTTTCCTGCAAAGATGAGCCTCTGCTGATCAGGTGGGATCCCCTCCTTGTCTTGAATC 229427 Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334 || | ||| | ||| ||| ||||| ||| || || || || || || || || || Sbjct 229428 TTAGCTTTCACATTGTCAATGGTATCAGAACTTTCCACCTCAAGTGTGATTGTCTTGCCC 229487 Query 193335 GTTAGCGTTTTTACAAATATTTGCATT 193361 || ||||| || || |||||||||||| Sbjct 229488 GTCAGCGTCTTCACGAATATTTGCATT 229514 >seq1014 Length=2264649 Score = 123 bits (136), Expect = 4e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || ||||| | || ||||| |||| ||||| || | ||| || ||| |||||||| Sbjct 109280 ATTCCACCACGCAGCCGAAGCACCAAGTGCAAGGTGGACTCCTTCTGAATGTTATAGTCA 109221 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | | || || ||| |||| ||| || || |||||||| || ||||| || || || Sbjct 109220 GCAAGAGTCCTTCCATCTTCTAGTTGCTTCCCAGCAAAAATCAACCTCTGCTGGTCTGGT 109161 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || ||||| || || || || || || | || | ||| |||||||| || ||| Sbjct 109160 GGGATTCCCTCCTTGTCCTGAATCTTTGCCTTCACATTGTCTATAGTATCCGAGCTTTCA 109101 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 ||||| | ||||||||||| ||||| ||||| || ||||| ||||||||| Sbjct 109100 ACTTCCAAGGTTATAGTTTTTCCTGTCAGCGTCTTCACAAAAATTTGCATT 109050 Score = 120 bits (132), Expect = 5e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || || || | ||| || || |||| |||| ||| | || || ||||| || || Sbjct 109508 ATTCCGCCACGCAAACGCAGCACCAAGTGCAGTGTCGATTCCTTTTGGATATTGTAATCT 109449 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | ||| || || ||| ||||| || || || |||||||| || ||||| || ||||| Sbjct 109448 GCTAAGGTCCTTCCATCTTCTAACTGCTTGCCAGCAAAAATCAACCTCTGCTGGTCAGGT 109389 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || |||||||| ||||| ||||| | || | ||| ||||||||||||| |||| Sbjct 109388 GGGATACCTTCTTTGTCTTGAATTTTAGCCTTCACATTATCAATAGTATCGGAACTCTCA 109329 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 || || | ||| || ||||| || || | || || || || || |||||| Sbjct 109328 ACCTCCAAAGTAATGGTTTTTCCAGTCAAGGTCTTAACGAAAATCTGCATT 109278 Score = 86.0 bits (94), Expect = 1e-11 Identities = 128/182 (70%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 193179 ATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTC 193238 ||||||||||||| | || | | || || | ||| || || ||||| || || ||| Sbjct 109004 ATATTATAGTCGGCAAGTGTCCGACCGTCTTCAAGTTGCTTGCCAGCAAAGATCAACCTC 108945 Query 193239 TGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTA 193298 ||||| || || || || || || || ||||| || || | || | ||| ||| || Sbjct 108944 TGTTGGTCTGGTGGGATACCCTCCTTGTCTTGGATCTTAGCCTTGACATTATCAATGGTG 108885 Query 193299 TCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGC 193358 || || || ||||| | |||||| ||||| || || | ||||| ||||| |||||| Sbjct 108884 TCCGAGCTTTCGACTTCCAAAGTTATGGTTTTTCCCGTCAAGGTTTTAACAAAGATTTGC 108825 Query 193359 AT 193360 || Sbjct 108824 AT 108823 >seq1025 Length=2429094 Score = 113 bits (124), Expect = 8e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 ||||| |||| |||||| || | ||| || ||| || || |||| ||| || || | Sbjct 1182131 CGAAGCACCAAATGCAAGGTGGACTCCTTCTGAATGTTGTAATCGGCTAATGTCCTTCCA 1182072 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || |||||||| || || ||||| || || ||||| ||||| || || || || || || Sbjct 1182071 TCTTCTAATTGCTTCCCAGCAAAGATCAACCTCTGCTGATCCGGTGGGATACCCTCCTTG 1182012 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 ||||| || || | || | ||| || ||||| || |||||||| | |||||| Sbjct 1182011 TCTTGGATCTTTGCCTTGACATTATCTATGGTATCCGAGCTTTCAACTTCCAAGGTTATA 1181952 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| || || | || || ||||| |||||||| Sbjct 1181951 GTTTTTCCCGTCAAGGTCTTCACAAAGATTTGCAT 1181917 Score = 93.3 bits (102), Expect = 8e-14 Identities = 161/234 (69%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 193127 TTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATA 193186 ||| | |||||| | | ||||| || || |||| || | ||| || ||||| || Sbjct 1182834 TTAGAAACCACCACGGAGGCGAAGAACAAGGTGCAGAGTGGACTCCTTCTGTATATTGTA 1182775 Query 193187 GTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATC 193246 || | | || || ||| || | ||||| || ||||| || | ||||| ||||| Sbjct 1182774 ATCCGCCAGAGTCCTTCCATCTTCAAGCTGTTTACCCGCAAAGATAAGCCTCTGCTGATC 1182715 Query 193247 AGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGA 193306 ||||||||||||||||| || || || || | ||| | ||| ||| ||||| ||| Sbjct 1182714 TGGAGGTATTCCTTCTTTGTCCTGAATCTTTGCTTTCACATTATCAATTGTATCAGAACT 1182655 Query 193307 CTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||| || || | || || || || || || | ||||| ||||| || ||||| Sbjct 1182654 CTCGACCTCCAAGGTAATGGTCTTCCCAGTCAATGTTTTCACAAAGATCTGCAT 1182601 >seq1868 Length=298818 Score = 109 bits (120), Expect = 1e-18 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || || || |||||||| || ||||| ||||| || | ||| || || || || ||| Sbjct 224384 ATCCCTCCCCTCAATCGGAGCACCAGGTGCAAAGTCGACTCCTTCTGTATGTTGTAATCG 224325 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | | || | ||| || ||||| || ||||| || || | ||||| ||||||||| Sbjct 224324 GCGAGGGTACGCCCATCCTCCAATTGCTTCCCGGCGAAGATGAGCCTCTGCTGATCAGGA 224265 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || ||||| || ||||| || |||| |||| || || ||||||||| ||| Sbjct 224264 GGAATGCCTTCCTTGTCTTGGATCTTGGCCTTTACGTTGTCGATGGTATCGGAACTCTCG 224205 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || || || || || || || ||||| || || || ||||| Sbjct 224204 ACCTCGAGGGTGATGGTCTTCCCGGTGAGGGTTTTGACGAAGATCTGCAT 224155 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 898464573318960