Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Juglans_20regia_20[refseq_20GCF_5F001411555.1_202015-10-22] 105,803 sequences; 699,672,627 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq1014 131 2e-25 seq1025 118 2e-21 seq55116 113 7e-20 >seq1014 Length=2264649 Score = 131 bits (144), Expect = 2e-25 Identities = 158/213 (74%), Gaps = 4/213 (2%) Strand=Plus/Plus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 |||||| || || |||| || |||||||||||||| ||||| || || || || ||| Sbjct 109278 AATGCAGATTTTCGTTAAGACCTTGACTGGAAAAACCATTACTTTGGAGGTTGAGAGTTC 109337 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 |||| |||| || ||||| |||||| ||||| |||||||| || || || || || Sbjct 109338 CGATACTATTGATAATGTGAAGGCTAAAATTCAAGACAAAGAAGGTATCCCACCTGACCA 109397 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 || || ||||||| ||| || |||||| | |||||| || || ||| ||||||| | Sbjct 109398 GCAGAGGTTGATTTTTGCTGGCAAGCAGTTAGAAGATGGAAGGACCTTAGCAGATTACA- 109456 Query 156002 TATATCCAAA--GAGGCGACGCTTCATTTAGTG 156032 ||||||||| || |||| || || || ||| Sbjct 109457 -ATATCCAAAAGGAATCGACACTGCACTTGGTG 109488 Score = 91.5 bits (100), Expect = 2e-13 Identities = 130/183 (71%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| ||| | || || |||| ||||||||||| || || ||||| ||| || Sbjct 109050 AATGCAAATTTTTGTGAAGACGCTGACAGGAAAAACTATAACCTTGGAAGTTGAAAGCTC 109109 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 |||| ||| || ||||| || || || || || || || || || ||||| || Sbjct 109110 GGATACTATAGACAATGTGAAGGCAAAGATTCAGGACAAGGAGGGAATCCCACCAGACCA 109169 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 || || ||||||| ||| || ||||| || |||||| || ||| | | || ||||| Sbjct 109170 GCAGAGGTTGATTTTTGCTGGGAAGCAACTAGAAGATGGAAGGACTCTTGCTGACTATAA 109229 Query 156002 TAT 156004 || Sbjct 109230 CAT 109232 >seq1025 Length=2429094 Score = 118 bits (130), Expect = 2e-21 Identities = 136/183 (74%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | |||||||||||||| || || ||||| || || ||||| |||| Sbjct 1182601 ATGCAGATCTTTGTGAAAACATTGACTGGGAAGACCATTACCTTGGAGGTCGAGAGTTCT 1182660 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| || |||||| || || || || |||||||| ||||||||||| || Sbjct 1182661 GATACAATTGATAATGTGAAAGCAAAGATTCAGGACAAAGAAGGAATACCTCCAGATCAG 1182720 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || | || | ||| ||||| ||||| |||||| || ||| | | ||||| ||| Sbjct 1182721 CAGAGGCTTATCTTTGCGGGTAAACAGCTTGAAGATGGAAGGACTCTGGCGGATTACAAT 1182780 Query 156003 ATA 156005 ||| Sbjct 1182781 ATA 1182783 Score = 107 bits (118), Expect = 3e-18 Identities = 139/191 (73%), Gaps = 1/191 (1%) Strand=Plus/Plus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 |||||| || ||| | || || |||||||||||||| ||||| || || || || || Sbjct 1182144 AATGCAGATTTTTGTCAAGACCTTGACTGGAAAAACCATTACTTTGGAGGTTGAGAGCTC 1182203 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 |||| ||| || ||||| ||| || ||||| |||||||| || || ||||| || Sbjct 1182204 CGATACCATTGATAATGTGAAGGCTAAGATTCAAGACAAAGAAGGTATCCCACCAGACCA 1182263 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 || || ||||||| ||| || |||||| | || ||| | || ||| | ||||| || Sbjct 1182264 GCAGAGGTTGATTTTTGCTGGCAAGCAGTTAGAGGATGGACGGACCTTAGCCGATTACAA 1182323 Query 156002 TATATCCAAAG 156012 ||| || |||| Sbjct 1182324 TAT-TCAAAAG 1182333 Score = 91.5 bits (100), Expect = 2e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| ||||||| | ||||||||||| || || || || |||||| || Sbjct 1181689 ATGCAAATCTTTGTTAAAACCCTTACTGGAAAAACCATAACTTTGGAGGTCGAAAGCTCG 1181748 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | |||| || || || ||| || ||||| || || || || || ||||| || Sbjct 1181749 GACACTATTGATAATGTCAAGGCTAAGATCCAAGACAAGGAGGGTATCCCACCAGACCAG 1181808 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGA 155977 || || | || | ||| || |||||||||||||| Sbjct 1181809 CAGAGGCTTATCTTTGCTGGAAAGCAGCTCGAAGA 1181843 >seq55116 Length=591887 Score = 113 bits (124), Expect = 7e-20 Identities = 134/182 (74%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | ||||| | || ||||| |||||||| | ||||| || ||| Sbjct 230425 ATGCAGATTTTTGTCAAAACGCTCACCGGAAAGACTATTACTCTTGAAGTTGAGAGTTCC 230366 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| |||||||| ||||| || || |||||||| || || ||||| || Sbjct 230365 GACACCATTGATAACGTGAAGGCAAAAATTCAGGACAAAGAAGGAATTCCCCCAGATCAG 230306 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || |||||| ||| || ||||||||||| ||| | ||||||| | ||||||||| Sbjct 230305 CAGAGGCTGATTTTTGCGGGAAAGCAGCTCGAGGATGGCCGAACTTTGGCTGATTATAAT 230246 Query 156003 AT 156004 || Sbjct 230245 AT 230244 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 730904071834800