Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Juglans_20regia_20[refseq_20GCF_5F001411555.1_202015-10-22] 105,803 sequences; 699,672,627 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq1014 129 1e-24 seq1025 123 5e-23 seq55116 118 2e-21 >seq1014 Length=2264649 Score = 129 bits (142), Expect = 1e-24 Identities = 139/184 (76%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413 |||||| ||||| | ||| || | | |||| || || || || |||||||| || || || Sbjct 109461 GATATTGTAATCTGCTAAGGTCCTTCCATCTTCTAACTGCTTGCCAGCAAAAATCAACCT 109402 Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473 ||| || |||||||| || |||||||| ||||| |||||| || |||||| |||| Sbjct 109401 CTGCTGGTCAGGTGGGATACCTTCTTTGTCTTGAATTTTAGCCTTCACATTATCAATAGT 109342 Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTG 192533 ||| || || || || | |||||||||||| ||||| || || |||| || ||||| Sbjct 109341 ATCGGAACTCTCAACCTCCAAAGTAATGGTTTTTCCAGTCAAGGTCTTAACGAAAATCTG 109282 Query 192534 CATT 192537 |||| Sbjct 109281 CATT 109278 Score = 109 bits (120), Expect = 1e-18 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||||| ||||| | || || || | || | || || ||||||||| || Sbjct 109052 ATTCCACCTCGGAGACGGAGCACCAAGTGGAGGGTTGATTCCTTTTGGATATTATAGTCG 108993 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | ||| || | || || | ||| || ||||||||||| || |||||||| || ||| Sbjct 108992 GCAAGTGTCCGACCGTCTTCAAGTTGCTTGCCAGCAAAGATCAACCTCTGTTGGTCTGGT 108933 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || || || ||||| || ||| || |||||| || | || || ||| Sbjct 108932 GGGATACCCTCCTTGTCTTGGATCTTAGCCTTGACATTATCAATGGTGTCCGAGCTTTCG 108873 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| | ||| |||||||| || || || ||||||| ||| || ||||| Sbjct 108872 ACTTCCAAAGTTATGGTTTTTCCCGTCAAGGTTTTAACAAAGATTTGCAT 108823 Score = 104 bits (114), Expect = 5e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | ||| || | || || || | || | ||||| ||| ||||| ||| Sbjct 108824 ATACCACCACGAAGGCGAAGCACCAAGTGAAGGGTGGATTCTTTTTGGATGTTATAGTCA 108765 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | || || || |||| || | || |||||||||||||| | ||||| || || ||| Sbjct 108764 GCCAAAGTGCGACCATCTTCGAGCTGCTTACCAGCAAAGATGAGCCTCTGCTGGTCCGGT 108705 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || || || || || ||||| ||||||||| |||| || || ||| Sbjct 108704 GGAATGCCCTCCTTGTCCTGGATTTTGGCTTTTACATTGTCAATAGTGTCCGAGCTTTCC 108645 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || || || || || || |||| || |||| |||||||||||| Sbjct 108644 ACCTCAAGGGTGATTGTCTTTCCGGTTAGAGTCTTAACAAATATCTGCAT 108595 Score = 91.5 bits (100), Expect = 3e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 192334 TGTAAAGTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTGT 192393 || ||||||| ||| || ||| || ||||| | | || | |||| || | ||| Sbjct 109937 TGCAAAGTAGACTCCTTTTGGATGTTGTAATCCGCCAGAGTCCTCCCATCTTCAAGCTGT 109878 Query 192394 TTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 192453 || || || ||||| | ||||| ||||| || || |||||||| || || || || || Sbjct 109877 TTCCCCGCGAAGATAAGCCTCTGCTGATCCGGAGGGATTCCTTCCTTGTCCTGAATCTTT 109818 Query 192454 TTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 192513 ||| |||||| || | || || ||||| || | |||||||| || ||||| Sbjct 109817 GCTTTCACATTATCAATCGTGTCAGAACTCTCTACCTCCAAGGTAATGGTCTTCCCAGTC 109758 Query 192514 AATGTTTTAATAAATATCTGCAT 192536 ||||| || | |||||||||||| Sbjct 109757 AATGTCTTCACAAATATCTGCAT 109735 >seq1025 Length=2429094 Score = 123 bits (136), Expect = 5e-23 Identities = 168/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATC 192365 || || |||| | ||| | || || || ||||| | || ||| || ||||| ||||| Sbjct 1182374 ATCCCTCCTCGCAAACGCAGCACCAAGTGCAAAGTCGATTCCTTTTGA-ATATTGTAATC 1182316 Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425 | ||| || ||| |||| || || || || |||||||| || || ||||| || || || Sbjct 1182315 GGCTAAGGTCCGTCCATCCTCTAACTGCTTGCCAGCAAAAATCAACCTCTGCTGGTCTGG 1182256 Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485 ||| || |||||||| ||||| || ||| || |||||| || | ||| || || Sbjct 1182255 TGGGATACCTTCTTTGTCTTGAATCTTAGCCTTCACATTATCAATGGTATCGGAGCTCTC 1182196 Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 || || | |||||||||||| ||||| || || || | ||| ||||||||| Sbjct 1182195 AACCTCCAAAGTAATGGTTTTTCCAGTCAAGGTCTTGACAAAAATCTGCATT 1182144 Score = 109 bits (120), Expect = 1e-18 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 192319 AGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGT 192378 ||||| | || ||||| || || | ||| || || || ||||| | |||||| | | Sbjct 1182134 AGACGAAGCACCAAATGCAAGGTGGACTCCTTCTGAATGTTGTAATCGGCTAATGTCCTT 1182075 Query 192379 TCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCT 192438 |||| || ||||| || ||||||||||| || ||||| ||||| ||||| || || || Sbjct 1182074 CCATCTTCTAATTGCTTCCCAGCAAAGATCAACCTCTGCTGATCCGGTGGGATACCCTCC 1182015 Query 192439 TTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTA 192498 || ||||| || || || |||||| ||| | ||| || ||| ||||| | || Sbjct 1182014 TTGTCTTGGATCTTTGCCTTGACATTATCTATGGTATCCGAGCTTTCAACTTCCAAGGTT 1181955 Query 192499 ATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || ||||| || || || || || | ||| || ||||| Sbjct 1181954 ATAGTTTTTCCCGTCAAGGTCTTCACAAAGATTTGCAT 1181917 Score = 107 bits (118), Expect = 4e-18 Identities = 133/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 192355 ATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTC 192414 ||||| ||||| | | || | | |||| || | |||||||| |||||||| | ||| Sbjct 1182782 ATATTGTAATCCGCCAGAGTCCTTCCATCTTCAAGCTGTTTACCCGCAAAGATAAGCCTC 1182723 Query 192415 TGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAA 192474 || ||||| || |||||||||||||| || || || || ||| |||||| || | | Sbjct 1182722 TGCTGATCTGGAGGTATTCCTTCTTTGTCCTGAATCTTTGCTTTCACATTATCAATTGTA 1182663 Query 192475 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGC 192534 || || || || || | |||||||| || ||||| |||||||| | ||| |||||| Sbjct 1182662 TCAGAACTCTCGACCTCCAAGGTAATGGTCTTCCCAGTCAATGTTTTCACAAAGATCTGC 1182603 Query 192535 AT 192536 || Sbjct 1182602 AT 1182601 Score = 84.2 bits (92), Expect = 4e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 192391 TGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATT 192450 || || ||||||||||| | ||||| || || ||||| || || || || ||||| || Sbjct 1181834 TGCTTTCCAGCAAAGATAAGCCTCTGCTGGTCTGGTGGGATACCCTCCTTGTCTTGGATC 1181775 Query 192451 TTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCA 192510 ||| || |||||| |||| || || ||| || || | ||| |||||||| ||| Sbjct 1181774 TTAGCCTTGACATTATCAATAGTGTCCGAGCTTTCGACCTCCAAAGTTATGGTTTTTCCA 1181715 Query 192511 GTTAATGTTTTAATAAATATCTGCAT 192536 || | ||||||| ||| || ||||| Sbjct 1181714 GTAAGGGTTTTAACAAAGATTTGCAT 1181689 >seq55116 Length=591887 Score = 118 bits (130), Expect = 2e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || |||||||| | ||||| || || || | || | ||||| ||| ||||||||| Sbjct 230424 ATCCCACCTCTCAAACGTAGAACCAAGTGGAGGGTGGATTCTTTCTGGATGTTATAATCA 230483 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | || ||||| |||| || | ||| || ||||||||||| | ||||| || || || Sbjct 230484 GCTAGAGTTCGGCCATCCTCGAGTTGCTTTCCAGCAAAGATAAGCCTCTGCTGGTCTGGG 230543 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||| || || || |||||||| ||| || ||| |||| ||| || || Sbjct 230544 GGAATTCCCTCCTTGTCCTGTATTTTTGCTTTGACGTTATCAATAGTATCAGAGCTCTCC 230603 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || ||||| ||||| || ||||| | || || | ||| |||||||| Sbjct 230604 ACCTCGAGAGTTATGGTCTTTCCAGTAAGAGTCTTGACAAAGATCTGCAT 230653 Score = 104 bits (114), Expect = 5e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| ||||| || | || | || | |||| ||| || |||||||||||| Sbjct 230196 ATACCACCCCTAAGGCGGAGAACCAGGTGGAGTGTAGACTCCTTCTGAATATTATAATCA 230255 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | || ||||| |||| || | || || || ||||| || | ||||| ||||| || Sbjct 230256 GCCAAAGTTCGGCCATCCTCGAGCTGCTTTCCCGCAAAAATCAGCCTCTGCTGATCTGGG 230315 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||||||||| || || ||||| || || ||| || | || || || Sbjct 230316 GGAATTCCTTCTTTGTCCTGAATTTTTGCCTTCACGTTATCAATGGTGTCGGAACTCTCA 230375 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| |||||||| || || || || | ||||| | ||| |||||||| Sbjct 230376 ACTTCAAGAGTAATAGTCTTTCCGGTGAGCGTTTTGACAAAAATCTGCAT 230425 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 983145437989050