Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Juglans_20regia_20[refseq_20GCF_5F001411555.1_202015-10-22] 105,803 sequences; 699,672,627 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq1014 141 2e-28 seq1025 122 2e-22 seq55116 100 5e-16 >seq1014 Length=2264649 Score = 141 bits (156), Expect = 2e-28 Identities = 141/183 (77%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 171888 ATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTC 171947 ||||| ||||||| ||| | | | | || || || || || ||||||||||| || ||| Sbjct 109460 ATATTGTAATCTGCTAAGGTCCTTCCATCTTCTAACTGCTTGCCAGCAAAAATCAACCTC 109401 Query 171948 TGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTA 172007 || ||||||||||| || |||||||| ||||| |||||| || |||||| |||||| Sbjct 109400 TGCTGGTCAGGTGGGATACCTTCTTTGTCTTGAATTTTAGCCTTCACATTATCAATAGTA 109341 Query 172008 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGC 172067 || || || || || | |||||||||||| ||||| || || |||| ||| |||||| Sbjct 109340 TCGGAACTCTCAACCTCCAAAGTAATGGTTTTTCCAGTCAAGGTCTTAACGAAAATCTGC 109281 Query 172068 ATT 172070 ||| Sbjct 109280 ATT 109278 Score = 98.7 bits (108), Expect = 2e-15 Identities = 116/157 (74%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 171913 CGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTT 171972 |||| || | ||| || |||||||| || || ||||||||||| ||||| || || || | Sbjct 108979 CGTCTTCAAGTTGCTTGCCAGCAAAGATCAACCTCTGTTGGTCTGGTGGGATACCCTCCT 108920 Query 171973 TATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAA 172032 | ||||| || ||| || |||||| || || || || ||| ||||| | ||| | Sbjct 108919 TGTCTTGGATCTTAGCCTTGACATTATCAATGGTGTCCGAGCTTTCGACTTCCAAAGTTA 108860 Query 172033 TGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||||| || || || ||||||| || || ||||| Sbjct 108859 TGGTTTTTCCCGTCAAGGTTTTAACAAAGATTTGCAT 108823 Score = 91.5 bits (100), Expect = 3e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | ||| || | || || || | || | ||||| || ||||| || Sbjct 108824 ATACCACCACGAAGGCGAAGCACCAAGTGAAGGGTGGATTCTTTTTGGATGTTATAGTCA 108765 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | |||| || | || || | || ||||||||||| || | ||||| ||||| ||| Sbjct 108764 GCCAAAGTGCGACCATCTTCGAGCTGCTTACCAGCAAAGATGAGCCTCTGCTGGTCCGGT 108705 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || || || || || ||||| ||||||||| ||||| || || ||| Sbjct 108704 GGAATGCCCTCCTTGTCCTGGATTTTGGCTTTTACATTGTCAATAGTGTCCGAGCTTTCC 108645 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || || || || || || || |||| || |||| ||||||||||| Sbjct 108644 ACCTCAAGGGTGATTGTCTTTCCGGTTAGAGTCTTAACAAATATCTGCAT 108595 Score = 84.2 bits (92), Expect = 4e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| | || || | || || || || || | ||| || ||| ||||| || Sbjct 109280 ATTCCACCACGCAGCCGAAGCACCAAGTGCAAGGTGGACTCCTTCTGAATGTTATAGTCA 109221 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | || | | | || || | ||| || ||||||||||| || ||||| ||||| ||| Sbjct 109220 GCAAGAGTCCTTCCATCTTCTAGTTGCTTCCCAGCAAAAATCAACCTCTGCTGGTCTGGT 109161 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || ||||| || || || || || || || ||||| ||||||||| || ||| Sbjct 109160 GGGATTCCCTCCTTGTCCTGAATCTTTGCCTTCACATTGTCTATAGTATCCGAGCTTTCA 109101 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 ||||| | || || ||||| || || | || || | || || |||||| Sbjct 109100 ACTTCCAAGGTTATAGTTTTTCCTGTCAGCGTCTTCACAAAAATTTGCATT 109050 >seq1025 Length=2429094 Score = 122 bits (134), Expect = 2e-22 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 171861 ACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCGTCATCC 171920 || || || ||||| | || || |||||| ||||| | ||| | ||| | || || Sbjct 1182353 ACCAAGTGCAAAGTCGATTCCTTTTGAATATTGTAATCGGCTAAGGTCCGTCCATCCTCT 1182294 Query 171921 AATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGT 171980 || || || ||||||||||| || ||||| ||||| ||||| || |||||||| ||||| Sbjct 1182293 AACTGCTTGCCAGCAAAAATCAACCTCTGCTGGTCTGGTGGGATACCTTCTTTGTCTTGA 1182234 Query 171981 ATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTA 172040 || ||| || |||||| || ||||| || || || || | |||||||||||| Sbjct 1182233 ATCTTAGCCTTCACATTATCAATGGTATCGGAGCTCTCAACCTCCAAAGTAATGGTTTTT 1182174 Query 172041 CCAGTTAATGTTTTAATGAATATCTGCATT 172070 ||||| || || || | || ||||||||| Sbjct 1182173 CCAGTCAAGGTCTTGACAAAAATCTGCATT 1182144 Score = 95.1 bits (104), Expect = 2e-14 Identities = 130/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 171888 ATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTC 171947 ||||| ||||| | | || | | | || || | |||||||| ||||| || | ||| Sbjct 1182782 ATATTGTAATCCGCCAGAGTCCTTCCATCTTCAAGCTGTTTACCCGCAAAGATAAGCCTC 1182723 Query 171948 TGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTA 172007 || || || || |||||||||||||| || || || || ||| |||||| || ||| Sbjct 1182722 TGCTGATCTGGAGGTATTCCTTCTTTGTCCTGAATCTTTGCTTTCACATTATCAATTGTA 1182663 Query 172008 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGC 172067 || || || || || | |||||||| || ||||| |||||||| | || |||||| Sbjct 1182662 TCAGAACTCTCGACCTCCAAGGTAATGGTCTTCCCAGTCAATGTTTTCACAAAGATCTGC 1182603 Query 172068 AT 172069 || Sbjct 1182602 AT 1182601 >seq55116 Length=591887 Score = 100 bits (110), Expect = 5e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||||| || || | || | ||||| ||| |||||| ||| || |||||| Sbjct 229512 ATTCCACCTCGTAGGCGAAGGACAAGATGTAGAGTGCTCTCTTTCTGAATGTTGTAATCT 229571 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | | || | || || | ||| || ||||||||||| | ||||| ||||| ||| Sbjct 229572 GCCAGGGTGCGGCCATCTTCAAGTTGCTTCCCAGCAAAAATAAGCCTCTGCTGGTCTGGT 229631 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || || ||||| |||||||| ||| |||||| || ||||| || || Sbjct 229632 GGGATCCCCTCCTTATCCTGTATTTTGGCTTTGACATTATCAATCGTATCAGAGCTCTCC 229691 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || || || ||||| || ||||| | || || | || |||||||| Sbjct 229692 ACCTCAAGGGTGATGGTCTTTCCAGTGAGGGTCTTTACAAAAATCTGCAT 229741 Score = 100 bits (110), Expect = 5e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| ||||| || | || | || | |||| ||| || |||||||||||| Sbjct 230196 ATACCACCCCTAAGGCGGAGAACCAGGTGGAGTGTAGACTCCTTCTGAATATTATAATCA 230255 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | |||| ||| | || || | || || || |||||||| | ||||| || || || Sbjct 230256 GCCAAAGTTCGGCCATCCTCGAGCTGCTTTCCCGCAAAAATCAGCCTCTGCTGATCTGGG 230315 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || ||||||||||| || || ||||| || || ||| || || || || || Sbjct 230316 GGAATTCCTTCTTTGTCCTGAATTTTTGCCTTCACGTTATCAATGGTGTCGGAACTCTCA 230375 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| |||||||| || || || || | ||||| | || |||||||| Sbjct 230376 ACTTCAAGAGTAATAGTCTTTCCGGTGAGCGTTTTGACAAAAATCTGCAT 230425 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903938923697400