Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Juglans_20regia_20[refseq_20GCF_5F001411555.1_202015-10-22] 105,803 sequences; 699,672,627 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq51957 116 1e-20 seq1761 111 5e-19 seq1990 105 2e-17 seq55722 104 7e-17 seq1182 93.3 1e-13 seq1147 84.2 6e-11 seq1005 84.2 6e-11 >seq51957 Length=105213 Score = 116 bits (128), Expect = 1e-20 Identities = 158/220 (72%), Gaps = 3/220 (1%) Strand=Plus/Minus Query 156049 TACCATTCCTCTTGCCACCC---TGATCTACATACCGAGCAGTCTTATTGAAGACACCTA 156105 |||| ||||||||||| ||| ||||| ||||| || || || | |||||| |||| || Sbjct 20025 TACCTTTCCTCTTGCCTCCCCCTTGATCAACATAACGCGCCGTATCATTGAATACACGTA 19966 Query 156106 GCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGC 156165 |||| |||| ||| |||||||| || ||||| || || ||||||| |||| | || Sbjct 19965 GCATTGGAACAATGCCATTGGATGTCCCATTTGTGCCACGAATATAACTTCCAGTAGCGC 19906 Query 156166 GAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCT 156225 ||| ||| || | | | ||||| ||||| | |||| || ||||||||||| Sbjct 19905 GAATATTGTGGACAGAGACACCAATTCCACCAGCTGATTTGCTGATAACAGCGCATTCCT 19846 Query 156226 TTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCAT 156265 | | || | | ||||||||||| |||||||| ||| Sbjct 19845 TCAAGGTGTCATATATACCTTCAATGCTATCATCTTGCAT 19806 >seq1761 Length=289715 Score = 111 bits (122), Expect = 5e-19 Identities = 157/220 (71%), Gaps = 3/220 (1%) Strand=Plus/Plus Query 156049 TACCATTCCTCTTGCCACCC---TGATCTACATACCGAGCAGTCTTATTGAAGACACCTA 156105 |||| ||||||||||| ||| ||||| ||||| || ||||| | ||||||||||| || Sbjct 164338 TACCTTTCCTCTTGCCCCCCCCTTGATCAACATAACGTGCAGTATCATTGAAGACACGTA 164397 Query 156106 GCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGC 156165 ||||||||| ||| ||||| || || ||||| ||||| ||||||| |||| || | Sbjct 164398 GCATAGGAACAATGCCATTAGATGTACCATTTGTTCCACGAATATAACTGCCAGTGGAAC 164457 Query 156166 GAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCT 156225 ||| || || | | | ||||| || || | | |||| || ||| || |||| Sbjct 164458 GAATGTTGTGGACAGAAACACCAATTCCTCCAGCCGATTTGCTGATAACAGCACACTCCT 164517 Query 156226 TTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCAT 156265 | | || | | || |||||||| |||||||| ||| Sbjct 164518 TCAAGGTGTCATATATGCCTTCAATGCTATCATCTTTCAT 164557 >seq1990 Length=294586 Score = 105 bits (116), Expect = 2e-17 Identities = 254/381 (67%), Gaps = 5/381 (1%) Strand=Plus/Minus Query 288964 TGATTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACCCGAATCGCTCCtt 289023 ||||| || || ||| | |||||||||| |||| ||| ||| | | |||| Sbjct 184889 TGATTTAGAGTACTTTCACGCTCATCATTTGCACCT---GAAAAGCCCCCACGCCCCCTT 184833 Query 289024 tttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCA 289083 | ||||| || ||||| || ||||| |||| | || |||| | || || || Sbjct 184832 GCTCGACCAATTGCGTCAATCTCATCAATAAAAACTATACTGGGAGCACACTGCCTTGCT 184773 Query 289084 ATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCA 289143 | ||| || | ||| || | |||| ||||| ||||||| |||| || | ||| ||| Sbjct 184772 TCTTGAAACAAGTTTCTCACCCTAGATGGTCCAACACCAACAAACATCTCCATAAAATCA 184713 Query 289144 GAAGCGGATACTTGAATGAAT-GTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAG 289202 ||| | |||| | || ||| | ||| | ||| || || ||| | || ||||| Sbjct 184712 GAACCAGATA-TGGAGAGAAAAGGCACACCAGATTCCCCCGCAGTTGCTTTTGCTAGAAG 184654 Query 289203 TGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGC 289262 ||| || ||||| || || || ||| | || ||| | || || || | ||||| || Sbjct 184653 TGTTTTTCCTGTGCCTGGGGGGCCCACCAAGAGAGCCCCTTTAGGAATCTTTGCTCCCAA 184594 Query 289263 AGACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGC 289322 || ||| |||| |||| |||||| || | |||| |||| | ||| | ||||| Sbjct 184593 TTCCTCATACTTCTTAGGGTTCTTTAGGAAGTGCACAAATTCCATGATTTCTTGCTTTGC 184534 Query 289323 CTCATCACATCCTGCTACATC 289343 ||||||||||| || ||||| Sbjct 184533 TTCATCACATCCGGCAACATC 184513 >seq55722 Length=703388 Score = 104 bits (114), Expect = 7e-17 Identities = 279/417 (67%), Gaps = 20/417 (5%) Strand=Plus/Minus Query 288838 ACCCGCACCCTCCTATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCT 288897 ||||||||| || ||||||| |||| | | ||| || | ||| | || || || Sbjct 349622 ACCCGCACCTGTCTGTCAAACCGTCCAGGCCTAAGTAACGCAGAGTCAAGAATGTCTGCC 349563 Query 288898 CTGTTTGTTGCTGCCAATACAACAATAG-ATTCGGTTTGCTTA-AATCCATCCATACTTG 288955 ||||| |||||||| | |||| ||| | | || ||| || |||||||| | Sbjct 349562 CTGTTAGTTGCTGCAACCACAATGATACCAGTA--TTACCTTCGAAACCATCCATTTCCG 349505 Query 288956 TTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACCCGAAT 289015 | |||| || ||||| |||||||| ||||||||||| |||| || |||| | Sbjct 349504 TCAAAAGCTGGTTAAGAGTTTGTTCTCTTTCATCATT---CCCTC------CA-CCGATT 349455 Query 289016 C--GCTCCttttttt--ACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAA 289071 | | |||| ||| | ||||||||||||||||| |||| || | | || |||| | Sbjct 349454 CCAGTTCCTCTTTGTCGTCCAACAGCATCAATTTCATCAACAAATACAATGCAAGGAGCA 349395 Query 289072 TTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATT 289131 || | | || || || | || | || ||||| || |||| ||||||| |||| Sbjct 349394 TTCTCCTTGGCCTTTTTGAAAAGATCACGAACTCGGGAGGCACCAACACCAACAAACATC 349335 Query 289132 TCTACAAATTCAGAAGCGGATACTTGA-ATGAATGTTACATTTGCTTCGCCTGCTACTGC 289190 || ||||| || ||| | || | | || | |||| ||| ||||| || || | || Sbjct 349334 TCAACAAACTCTGAACCTGAGA-TGGAGAAAAATGGAACACCAGCTTCACCAGCAATCGC 349276 Query 289191 CCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGG 289247 | | || || | ||||| || |||||||| || || | ||||| || ||||| Sbjct 349275 CTTGGCTAGCAAAGTCTTCCCAGTTCCAGGAGGACCAATAAGAAGAACCCCTTTTGG 349219 >seq1182 Length=383271 Score = 93.3 bits (102), Expect = 1e-13 Identities = 282/422 (67%), Gaps = 18/422 (4%) Strand=Plus/Minus Query 288939 AAATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACC 288998 ||| |||||||| || || | || || | ||||| ||||| |||||||| ||| Sbjct 49771 AAACCCATCCATCTCCGTCAAGAGCTGGTTGATAGTTTGCTCCCTCTCATCATTCCCACC 49712 Query 288999 TCTTGAATCACCCGAATCGCTCCtttttttACCAACAGCATCAATTTCGTCAATGAAAAT 289058 || || | |||| | ||| | | || || |||||||| || || ||||| | Sbjct 49711 TCC--AAGC-CCCGCCCCTCTC---TGCCTCCCCACCGCATCAATCTCATCGATGAACAC 49658 Query 289059 CACACACGGAGAATTTTGTCTCGCAATTG-CAAATAATTCTCTTACACGGGATGCTCCAA 289117 | ||||| | ||| | || | || | || || || || || | || || |||| Sbjct 49657 AATGCACGGCGC-TTTCGACTTGGCTTTCTCGAACAAGTCCCTCACTCTCGAAGCCCCAA 49599 Query 289118 GACCAACATACATTTCTACAAATTCAGAAGCGG-ATACTTGAATGAATGTTACATTTGCT 289176 || ||| ||| ||| ||||| || ||||||| | || ||| ||||| || ||| Sbjct 49598 CTCCCACAAACAATTCCACAAACTCCGAAGCGGCACACGAGAA-GAATGGCACGCCTGCC 49540 Query 289177 TCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGA 289236 ||||||| ||||| || |||| || ||||| || || || || |||||| | | | | Sbjct 49539 TCGCCTGAGACTGCTCTTGCCAATAGGGTCTTCCCAGTACCGGGGGGTCCCACAAGCA-A 49481 Query 289237 ACTCCCTTT-GGTACTTTTGC-CCCAG--CAGACTTATATTTCTCAGGGCTCTTTAAAAA 289292 | |||||| || | ||| || ||||| ||| |||| || || ||| | || || || Sbjct 49480 GCACCCTTTTGGGATTTTAGCTCCCAGGGCAG---TATACTTATCTGGGTTTTTCAAGAA 49424 Query 289293 TTCTACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAAAAGT 289352 || || | ||| | | |||| || || | ||| |||||||||||| || || || Sbjct 49423 ATCAACGACTTCTTGCAATTCAAGCTTCGCTTGGTCAGCTCCTGCTACATCGGCGAATGT 49364 Query 289353 AA 289354 || Sbjct 49363 AA 49362 >seq1147 Length=783269 Score = 84.2 bits (92), Expect = 6e-11 Identities = 213/318 (67%), Gaps = 6/318 (2%) Strand=Plus/Plus Query 289029 ACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGC 289088 ||||| |||||||| || ||||| |||| | || |||| | || || || | Sbjct 747371 ACCAATTGCATCAATCTCATCAATAAAAACTATACTGGGAGCACACTGCCTAGCTTCTTG 747430 Query 289089 AAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGC 289148 ||| || | ||| || | ||||| ||||| |||||| |||| || | || || ||| | Sbjct 747431 AAACAAGTTTCTCACCCTGGATGGTCCAACTCCAACAAACATCTCCATGAAATCTGAACC 747490 Query 289149 GGATACTTGAATGAAT-GTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCT 289207 |||| | || ||| | ||| | ||| ||||| ||| | || ||||| |||| Sbjct 747491 AGATA-TGGAGAGAAAAGGAACACCAGATTCCCCTGCAGTTGCTTTTGCTAGAAGGGTCT 747549 Query 289208 TACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGC-CCCAGCAGAC 289266 | ||||| || || || || | || ||| | || || || | |||| |||| || | Sbjct 747550 TTCCTGTGCCTGGAGGCCCTACCAAGAGAGCCCCTTTAGGAATCCTTGCTCCCA--AGTC 747607 Query 289267 TT-ATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTC 289325 | ||| |||| || ||| | || | |||| |||| || ||| | |||||||| Sbjct 747608 CTCATACTTCTTCGGATGCTTCAGGAAGTGCACAAATTCCATAATTTCCTGCTTTGCCTC 747667 Query 289326 ATCACATCCTGCTACATC 289343 |||||| || || ||||| Sbjct 747668 ATCACAGCCAGCAACATC 747685 >seq1005 Length=86346 Score = 84.2 bits (92), Expect = 6e-11 Identities = 102/137 (74%), Gaps = 4/137 (3%) Strand=Plus/Minus Query 289086 TGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGA 289145 |||||||| ||||| |||||||| || || | |||||||||| |||||||| ||| Sbjct 20040 TGCAAATAGATCTCTCACACGGGAGGCACCCATGCCAACATACAACTCTACAAACTCACT 19981 Query 289146 AGCGGAT--ACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGT 289203 || || ||| ||| || | || | ||||| || || || ||| | |||||||| Sbjct 19980 GGCAGAACAACT--AATAAACGGCACTTCAGCTTCCCCAGCCACAGCCTTTGCCAGAAGA 19923 Query 289204 GTCTTACCTGTTCCAGG 289220 ||||||||||| ||||| Sbjct 19922 GTCTTACCTGTCCCAGG 19906 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1469822402681611