Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Juglans_20regia_20[refseq_20GCF_5F001411555.1_202015-10-22] 105,803 sequences; 699,672,627 total letters Query= NC_021530.1 Length=171407 Score E Sequences producing significant alignments: (Bits) Value seq1861 343 2e-89 seq47040 163 3e-35 seq54963 149 7e-31 >seq1861 Length=68153 Score = 343 bits (380), Expect = 2e-89 Identities = 644/942 (68%), Gaps = 16/942 (2%) Strand=Plus/Plus Query 159330 TTTGTTTTTGTGGGGTGGTCTGGACTACTACTTCTTCCCACTGCTTATCTGGCCATTGGC 159389 || |||||||| || ||||| || ||| |||| |||| ||| ||| | ||| | || Sbjct 26985 TTCGTTTTTGTAGGTTGGTCCGGTCTATTACTCTTTCCTTGTGCCTATTTTGCCTTAGGG 27044 Query 159390 GGTTGGCTTACTGGCACAGCTTTTGTTACGAGTTGGTACACCCACGGTCTTGCTAGTTCC 159449 |||||| |||| || ||| | ||||| || | ||| || ||||| | || |||||| Sbjct 27045 GGTTGGTTTACAGGTACAACCTTTGTAACTTCATAGTATACACACGGATTGGCGAGTTCC 27104 Query 159450 TATCTTGAGGG-TGCTAACTTTCTCACAGCAGCTGTCTCGACGCCTGCTGACGCTATGGG 159508 ||| | || || ||| ||||| | || || || || || || | ||| | | | | Sbjct 27105 TATTTGGAAGGCTGC-AACTTCTTAACCGCTGCAGTTTCTACTCTCGCTAATAGTTTAGC 27163 Query 159509 TCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAGGGGAATTTCCAGCGGTGGTGCCA 159568 || ||| | | |||| |||||||| || | || || |||| | ||||| || Sbjct 27164 ACACTCTTTGTTGTTACTATGGGGTCCAGAAACACAAGGAGATTTTACTTGTTGGTGTCA 27223 Query 159569 ACTTGGGGGATTATGGAATTTTGTGGCACTCCACGGTGCCTTCGCCCTAATTGGTTTCAT 159628 | | || | | |||| |||||| || ||| | ||||| ||| ||| Sbjct 27224 ATTAGGTAGTCTGTGGACTTTTGTTGCTCTCT-----------GGACTAATAGGTCTCAC 27272 Query 159629 GCTCCGTCAGTTTGAACTGGCACG-TCTCATTGGTATCCGTCCTTACAATGCTATTGCGT 159687 | | ||| |||||||||| || || ||| | | | || ||||| ||||| || || | Sbjct 27273 GTTACGTTAGTTTGAACTTGCTCGATCTGTTCAAT-TGCGACCTTATAATGCAATCGCAT 27331 Query 159688 TCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTCCTCATCTACCCATTGGGTCAGTCCA 159747 |||||| ||| |||||| ||||| | || || || || || | | | ||||| || Sbjct 27332 TCTCTGCTCCAATTGCTTTTTTTTTTTTGGTATTGCTGATTTATCTACTAGGTCAATCGG 27391 Query 159748 GTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCAATCTTTAGATTCCTGTTGTTCCTTC 159807 ||||||| || | || |||||| || ||||| || ||| |||| | | || | Sbjct 27392 GTTGGTTCTTTGTGCCTAGCTTTGGTGTAGCAGCTATATTTC-ATTCTTTCTCTTTTTCT 27450 Query 159808 AAGGATTTCACAACTGGACGTTAAATCCCTTCCATATGATGGGAGTTGCTGGTATACTAG 159867 |||| ||||| || ||||| || || || || ||||||||||| ||||||||| || | | Sbjct 27451 AAGGGTTTCATAATTGGACATTGAACCCATTTCATATGATGGGGGTTGCTGGTGTAATTG 27510 Query 159868 GTGGAGCACTACTCAGTGCCATCCATGGCGTTACTGTAGAGAACACACTGTATGAAGATG 159927 | | || || || | | || ||||| | ||| |||| | || | | |||||||| Sbjct 27511 GCGCTGCTCTGCTATGCGTTATTCATGGTGCTACCTTAGAAAGTACTTTATTTGAAGATG 27570 Query 159928 GAGAACAAGCAAATACCTTTAAGGCGTTTGATTCAACTCAAGAGGAGGAGACTTACTCTA 159987 | || |||||||| ||| || ||| | ||||||||| || || ||||| || | Sbjct 27571 GTGATGGTGCAAATACATTTTGTGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAA 27630 Query 159988 TGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCGTTTTCTAACAAGCGGT 160047 ||||||| || |||| ||| ||||| || ||||| || || | ||||| || || || | Sbjct 27631 TGGTCACCGCTAACCACTTTTGGTCCCAAATCTTTGGGGTTACTTTTTCCAATAAACGTT 27690 Query 160048 GGCTTCATTTCTTCATGTTGTTTGTGCCTGTTATGGGTCTTTGGACATCCTCTATTGGCA 160107 || | |||||| | ||| | ||||| | || | || | |||| || |||| Sbjct 27691 GGTTACATTTCCTTATGCTATTTGTACTAGTAACCAGTTTATGGATGAGTGCTCTTGGAG 27750 Query 160108 TTATTGGCCTTGCTCTTAATCTTCGTGCTTACGATTTCGTAAGTCAAGAGATCAGAGCAG 160167 | | || || ||||| || || ||||| || || || || ||| || ||| | |||| Sbjct 27751 TAGTCGGTCTGGCTCTGAACCTACGTGCCTATGACTTTGTTTCTCAGGAAATCCGTGCAG 27810 Query 160168 CAGAAGATCCAGAATTTGAGACCTTCTACACCAAAAACATCCTATTGAACGAAGGACTAC 160227 ||||||||| ||||||||||| |||||||| ||||| || || || || ||||| | | Sbjct 27811 TAGAAGATCCTGAATTTGAGACTTTCTACACAAAAAATATTCTTTTAAATGAAGGTATTC 27870 Query 160228 GTGCATGGTTGGCACCTGCTGATCAACCCCATGAAAACTTTA 160269 ||| ||| ||| || ||||| || ||||||||||||| Sbjct 27871 ATGCTTGGATGGAGGCTCAAGATCAGCCTCATGAAAACTTTA 27912 >seq47040 Length=8764 Score = 163 bits (180), Expect = 3e-35 Identities = 165/215 (77%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 157964 GTAGCATATTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCCTCGTCTATCCTTTCGGT 158023 || |||||||| ||||| || || || || || |||| ||| | ||||||| | ||| Sbjct 5687 GTTGCATATTCAGCTCCTGTTGCAGCTGCTACTACTGTTTTCTTGATCTATCCAATTGGT 5628 Query 158024 CAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTT 158083 ||||| || || | | || |||||| || || ||||||||||| |||| |||| || Sbjct 5627 CAAGGAAGCTTTTCTCACGGTAAGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATT 5568 Query 158084 GTATTCCAAGCAGAACACAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTGCTGGG 158143 |||||||| || || |||||||||||||||||||| || |||||| | ||||| ||||| Sbjct 5567 GTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCATATGTTAGGTGTAGCTGGT 5508 Query 158144 GTATTCGGTGGATCTCTTTTCTCTGCTATGCACGG 158178 |||||||| || | || || ||||||||| || Sbjct 5507 GTATTCGGCGGCTTCCTATTTAGTGCTATGCATGG 5473 >seq54963 Length=251348 Score = 149 bits (164), Expect = 7e-31 Identities = 162/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 157964 GTAGCATATTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCCTCGTCTATCCTTTCGGT 158023 || |||||||| ||||| || | || || ||||||| || | ||||||| | ||| Sbjct 117193 GTTGCATATTCAGCTCCTGTTGTAGCTGCTACTGCTGTTTTATTGATCTATCCAATTGGT 117252 Query 158024 CAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTT 158083 ||||| || || || | ||||||||| || || ||||||||||| |||| |||| || Sbjct 117253 CAAGGAAGCTTTTCTGACGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATT 117312 Query 158084 GTATTCCAAGCAGAACACAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTGCTGGG 158143 |||||||| || || |||||||||||||||||||| || || ||| | |||| ||| Sbjct 117313 GTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTACGTGTAATTGGT 117372 Query 158144 GTATTCGGTGGATCTCTTTTCTCTGCTATGCACGG 158178 |||||||| || || || || || |||||| || Sbjct 117373 GTATTCGGCGGCTCCCTATTTAGTGTTATGCATGG 117407 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547649154291960