Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Juglans_20regia_20[refseq_20GCF_5F001411555.1_202015-10-22] 105,803 sequences; 699,672,627 total letters Query= NC_021559.1 Length=179063 Score E Sequences producing significant alignments: (Bits) Value seq1861 248 1e-60 seq47040 136 5e-27 seq54963 118 1e-21 seq2016 91.5 2e-13 >seq1861 Length=68153 Score = 248 bits (274), Expect = 1e-60 Identities = 654/997 (66%), Gaps = 35/997 (4%) Strand=Plus/Plus Query 73364 TTTGACGTTCTTGATGATTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTCTGGT 73423 ||||| || | ||||| |||||| ||| || | |||||| || | || ||||| ||| Sbjct 26949 TTTGATATTATGGATGACTGGTTACGGAGGGACCATTTCGTTTTTGTAGGTTGGTCCGGT 27008 Query 73424 CTTTTACTTTTACCTTGTGCTTACCTAGCAATCGGAGGTTGGTTCGTAGGAACTACTTTC 73483 || ||||| || |||||||| || | || | || |||||||| ||| || || || Sbjct 27009 CTATTACTCTTTCCTTGTGCCTATTTTGCCTTAGGGGGTTGGTTTACAGGTACAACCTTT 27068 Query 73484 GTGACCTCATGGTACACACATGGTATTGCATCCTCATATCTTGAGGGAGCAAATTTTTTA 73543 || || |||| ||| ||||| || | || || ||| | || || || || ||| Sbjct 27069 GTAACTTCATAGTATACACACGGATTGGCGAGTTCCTATTTGGAAGGCTGCAACTTCTTA 27128 Query 73544 ACTGCAGCAGTATCAACACCTGGTGATGCTATGGGTCATAGTCTATTGTTCCTTTGGGGA 73603 || || ||||| || || | | | || | | | || | | ||||| || ||||| Sbjct 27129 ACCGCTGCAGTTTCTACTCTCGCTAATAGTTTAGCACACTCTTTGTTGTTACTATGGGGT 27188 Query 73604 CCAGAGGCACAAGGAGATCTTGTACGATGGTTTCAATTAGGTGGACTATGGAACTTTGTA 73663 ||||| ||||||||||| || | |||| |||||||||| | || |||| ||||| Sbjct 27189 CCAGAAACACAAGGAGATTTTACTTGTTGGTGTCAATTAGGTAGTCTGTGGACTTTTGTT 27248 Query 73664 GCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTTAGACAGTTTGAGATTGCAGGA 73723 || ||| |||||| |||||| ||| | | | ||||||| |||| || Sbjct 27249 GC-----------TCTCTGGACTAATAGGTCTCACGTTACGTTAGTTTGAACTTGCTCGA 27297 Query 73724 CTTGTTGGGATACGTCCTTACAACGCATTAGCTTTTTCAGCAGTTATCGCAGTATTCACG 73783 |||| | || ||||| || ||| | || || || || || || | || Sbjct 27298 TCTGTTCAATTGCGACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTTTTTTTTTT 27357 Query 73784 AGCATCTTTCTAATATATCCTTTAGGACAGCATAGTTGGTTCTTCGCACCTTCATTCGGT 73843 | || || || |||| |||| || |||||||||| | ||| || ||| Sbjct 27358 TTGGTATTGCTGATTTATCTACTAGGTCAATCGGGTTGGTTCTTTGTGCCTAGCTTTGGT 27417 Query 73844 GTCGCAGCAATCTTTCGTTATATTT-TATTCATACAGGGTTTCCACAATATAACTCTTAA 73902 || ||||| || |||| || | | | | || || |||||||| | ||| || | || Sbjct 27418 GTAGCAGCTATATTTCATTCTTTCTCTTTTTCTA-AGGGTTTC-ATAATTGGACATTGAA 27475 Query 73903 TCCATTTCATATGATGGGTGTAGCAGGTATACTTGGTGGAGCATTACTATGTGCCATACA 73962 ||||||||||||||||| || || ||| || |||| | || | ||||| | || || Sbjct 27476 CCCATTTCATATGATGGGGGTTGCTGGTGTAATTGGCGCTGCTCTGCTATGCGTTATTCA 27535 Query 73963 TGGTGCAACAGTACAGAACACATTGTATGAAGACACATCACAATACACTGAAGGTAAGAT 74022 |||||| || || | | || || | |||||| ||| ||| Sbjct 27536 TGGTGCTACCTTAGAAAGTACTTTATTTGAAGATGG------------TGATGGTG---- 27579 Query 74023 TCAATCTACAACTTTCAGAGCATTCGATCCTACACAGGAAGAAGAGACTTATAGTATGAT 74082 ||| |||| || | || || | || || || | ||||| |||||| ||| | Sbjct 27580 -CAAA-TACATTTT---GTGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGT 27634 Query 74083 TACTGCTAACAGATTCTGGTCACAGATATTTGGTATAGCATTTTCAAACAAAAGATTCTT 74142 || |||||| || ||||| || || ||||| | | ||||| || ||| | | || Sbjct 27635 CACCGCTAACCACTTTTGGTCCCAAATCTTTGGGGTTACTTTTTCCAATAAACGTTGGTT 27694 Query 74143 ACACTTCCTTATGTTGTTCGTACCTGTCATGGGTATGTGGACATCATCTATAGGTATCGT 74202 ||| ||||||||| | || |||| || | || | |||| || | || | || Sbjct 27695 ACATTTCCTTATGCTATTTGTACTAGTAACCAGTTTATGGATGAGTGCTCTTGGAGTAGT 27754 Query 74203 AGGTCTAGCACTTAACCTTAGAGCATACGACTTTGTATCTCAAGAGATAAGAGCAGCAGA 74262 ||||| || || ||||| | || || |||||||| ||||| || || | |||| ||| Sbjct 27755 CGGTCTGGCTCTGAACCTACGTGCCTATGACTTTGTTTCTCAGGAAATCCGTGCAGTAGA 27814 Query 74263 AGACCCAGAGTTTGAAACCTTCTACACTAAGAACATTCTTCTTAATGAAGGTATGAGAGC 74322 ||| || || ||||| || |||||||| || || |||||| | ||||||||||| || Sbjct 27815 AGATCCTGAATTTGAGACTTTCTACACAAAAAATATTCTTTTAAATGAAGGTATTCATGC 27874 Query 74323 ATGGATGTCATCTGTCGATCAACCCCATGAGAACTTT 74359 |||||| || ||||| || ||||| |||||| Sbjct 27875 TTGGATGGAGGCTCAAGATCAGCCTCATGAAAACTTT 27911 >seq47040 Length=8764 Score = 136 bits (150), Expect = 5e-27 Identities = 161/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 72619 GTAGCATACTCAGCACCTGTATCTGCAGCATTTGCAGTATTCCTTGTGTATCCATTCGGT 72678 || ||||| ||||| ||||| | || || | | || ||| | | |||||| | ||| Sbjct 5687 GTTGCATATTCAGCTCCTGTTGCAGCTGCTACTACTGTTTTCTTGATCTATCCAATTGGT 5628 Query 72679 CAGGGTTCATTCTCTGATGGTATGCCACTAGGTATCTCAGGTACGTTCAACTTCATGTTC 72738 || || || ||| | |||| ||| ||||| || || ||||| |||||||||||| | Sbjct 5627 CAAGGAAGCTTTTCTCACGGTAAGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATT 5568 Query 72739 GTGTTCCAAGCAGAACACAACATACTAATGCACCCCTTCCATATGGCAGGTGTAGCAGGT 72798 || ||||| || || |||||||| || |||||||| || |||||| ||||||||| ||| Sbjct 5567 GTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCATATGTTAGGTGTAGCTGGT 5508 Query 72799 ATGTTCGGTGGTAGTCTCTTCAGTGCAATGCACGGTTC 72836 | ||||| || || || ||||| ||||| ||||| Sbjct 5507 GTATTCGGCGGCTTCCTATTTAGTGCTATGCATGGTTC 5470 >seq54963 Length=251348 Score = 118 bits (130), Expect = 1e-21 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 72619 GTAGCATACTCAGCACCTGTATCTGCAGCATTTGCAGTATTCCTTGTGTATCCATTCGGT 72678 || ||||| ||||| ||||| || || ||| || || | | |||||| | ||| Sbjct 117193 GTTGCATATTCAGCTCCTGTTGTAGCTGCTACTGCTGTTTTATTGATCTATCCAATTGGT 117252 Query 72679 CAGGGTTCATTCTCTGATGGTATGCCACTAGGTATCTCAGGTACGTTCAACTTCATGTTC 72738 || || || ||||| |||||||| ||||| || || ||||| |||||||||||| | Sbjct 117253 CAAGGAAGCTTTTCTGACGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATT 117312 Query 72739 GTGTTCCAAGCAGAACACAACATACTAATGCACCCCTTCCATATGGCAGGTGTAGCAGGT 72798 || ||||| || || |||||||| || |||||||| || || ||| | ||||| ||| Sbjct 117313 GTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTACGTGTAATTGGT 117372 Query 72799 ATGTTCGGTGGTAGTCTCTTCAGTGCAATGCACGGTTC 72836 | ||||| || || || |||| ||||| ||||| Sbjct 117373 GTATTCGGCGGCTCCCTATTTAGTGTTATGCATGGTTC 117410 >seq2016 Length=232386 Score = 91.5 bits (100), Expect = 2e-13 Identities = 102/135 (76%), Gaps = 1/135 (1%) Strand=Plus/Plus Query 72688 TTCTCTGATGGTATGCCACTAGGTATCTCAGGTACGTTCAACTTCATGTTCGTGTTCCAA 72747 || |||||||||||||| | ||| | || |||| ||||| |||||| | || ||||| Sbjct 155485 TTTTCTGATGGTATGCCTCCAGGAAGTTCGCGTACTTTCAAGTTCATGATTGTATTCCAG 155544 Query 72748 GCAGAACACAACATACTAATGCACCCCTTCCATATGGCAGGTGTAGCAGGTATGTTCGGT 72807 || || || ||||| || ||||||| || || ||| ||||||||| ||| | ||| || Sbjct 155545 GCTGAGCAGAACAT-CTTTTGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCAGT 155603 Query 72808 GGTAGTCTCTTCAGT 72822 || ||||||||| Sbjct 155604 GGCTCCCTCTTCAGT 155618 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 572115953181240