Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Juglans_20regia_20[refseq_20GCF_5F001411555.1_202015-10-22] 105,803 sequences; 699,672,627 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq54992 194 2e-43 seq50617 185 1e-40 seq4953 141 1e-27 seq55453 95.1 1e-13 seq9109 95.1 1e-13 seq1878 93.3 5e-13 seq1512 91.5 2e-12 seq1801 87.8 2e-11 >seq54992 Length=480207 Score = 194 bits (214), Expect = 2e-43 Identities = 223/295 (76%), Gaps = 4/295 (1%) Strand=Plus/Plus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 ||||| || |||||||||||||||||||||||||| ||||| | |||| || || ||| Sbjct 460385 GAGTGAATATTCTCGATGGCGATCTGGAAGCCGTAGAAGGCGCGGGCCTCGGCGACCTGG 460444 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 |||||||||||||||| ||| || || ||||| ||||||||||| |||||| || Sbjct 460445 ACCTCCTTCATGAACCTGCCAGCGAGATTCTCCAAAACGATGCCGTCAGAGGCGGCAAAG 460504 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTG-GAC 869811 || || |||| ||| || ||||| ||||||| || || |||| || || Sbjct 460505 AAGGCAAGGATGTGGGAAATGAAGTGTTTCTCGTCGGGAGAAAGGGATTCCCAATGAGAA 460564 Query 869812 GGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTA 869871 | ||| || |||||| ||||||||||||||||||| |||||||| || || ||||| Sbjct 460565 AG-GTCCTCGGAGAGGTCAACCTCCTCGGCGGTCCAGAATGAGGCCTCAGCTTTCTTGTA 460623 Query 869872 CATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACA-AAGCGGTTGGGGTT 869925 ||| ||||||| || | |||| |||| ||||| | ||| || |||| ||||| Sbjct 460624 CATTTCCCATATTTCCGGGTACTGGATCGGGAACA-TACAGAAACGGTCCGGGTT 460677 Score = 129 bits (142), Expect = 7e-24 Identities = 187/262 (71%), Gaps = 8/262 (3%) Strand=Plus/Plus Query 869186 TCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTCTTGAGC 869245 |||||| ||||| |||||| |||| || |||||||| | |||||||||||| | | Sbjct 460114 TCGCGA--GATCAGCTCGTTGGAGAAGGTCAGACCGGGCATCAAGCCGCGCTTCTTCAAC 460171 Query 869246 CAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAGCCGATG 869305 || |||||||||||||| || || ||||| ||||| || || || || || ||| | Sbjct 460172 CAGAAGATGGCGCAGAAGCTTCCGGAGAAGAAGATACCTTCTACACACGCGAAAGCGACG 460231 Query 869306 AGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCCCAGTCGGCC 869365 | ||||| || |||| || ||||| || |||||| || ||||| | ||| Sbjct 460232 ATGCGCTCAGCGAAGGACTC--GGCCC----CGTCGATCCAGCGCAGGGCCCACTGTGCC 460285 Query 869366 TTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTTTCGGCCGGG 869425 || || || | || || || ||||||||| | |||||| ||| ||| | ||| | | Sbjct 460286 TTCTTAGCGACGCAAGGGACGGTCTCGATGGCGTGGAAGAGGCGGTGCTTCTGGGCGGAG 460345 Query 869426 TCCTTGACATAGGTGTCGATCA 869447 ||||||| ||||| |||| || Sbjct 460346 TCCTTGATGTAGGTCTCGAGCA 460367 Score = 114 bits (126), Expect = 2e-19 Identities = 173/244 (71%), Gaps = 4/244 (2%) Strand=Plus/Plus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| |||||| || || | | ||| || || |||||||| || | | |||||| Sbjct 459791 GCCTTCTGGTACTCCCCGACTCTCTTCTCAAAGAAATTGGTCTTCCCTTGCAACGAGATG 459850 Query 868751 AACTCCATCCACGGGAACGGGTT--GGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACG 868808 | ||||||||| ||| ||||| || ||| ||||| ||| || | || |||| Sbjct 459851 AGCTCCATCCAATCGAAGGGGTTCTGGACGT--TGTAGATCTTCCCGTACCCTAGCGCAC 459908 Query 868809 CGAGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGA 868868 | | || | |||||| || || ||||||||||||| ||| || || ||||||| || | Sbjct 459909 CCAATAGCCTGTCGGCCACGAATTCGATGTACTGGCTCATCAGCTCGCCGTTCATTCCCA 459968 Query 868869 TGAGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGA 868928 | ||| ||||||| |||| ||| |||||| ||||||| || || || ||| || Sbjct 459969 CCAACGCACATGGCAGCGCGTCGCACACGAACTCTCTCTCGATGTCCACCGCGTCGCGGA 460028 Query 868929 TGAT 868932 |||| Sbjct 460029 TGAT 460032 >seq50617 Length=115889 Score = 185 bits (204), Expect = 1e-40 Identities = 204/272 (75%), Gaps = 0/272 (0%) Strand=Plus/Minus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 ||||| || || |||||||| |||||||||||||| ||||| | |||| || || ||| Sbjct 92130 GAGTGAATATTTTCGATGGCAATCTGGAAGCCGTAGAAGGCGCGGGCCTCGGCAACCTGG 92071 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 |||||||||||||||| || || |||||||| |||||||| || || || || Sbjct 92070 ACCTCCTTCATGAACCTCCCAGCGAGGTTCTCCAAAACGATGCCATCTGAAGCTGCAAAG 92011 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGACG 869812 ||||| |||||||| |||||||| ||||||| | |||| | |||| ||| | Sbjct 92010 AAAGCTAGGACGTGGGAAATAAAGTGTTTCTCGTCGGGGGTGAGGGCTTCCCATTGGCGG 91951 Query 869813 GTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTAC 869872 ||| |||||| ||||||||||| ||||||| ||||||||||| || |||||| Sbjct 91950 AGGTCCTGAGAGAGGTCAACCTCCTCGGCAGTCCAGAAAGAGGCCTCGGCTTTCTTGTAC 91891 Query 869873 ATCTCCCATACTTGCTGGTAGCGGATAGGGAA 869904 |||||||||| || |||| |||| || || Sbjct 91890 ATCTCCCATATTTCGGGGTACTGGATCGGAAA 91859 Score = 129 bits (142), Expect = 7e-24 Identities = 186/263 (71%), Gaps = 6/263 (2%) Strand=Plus/Minus Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239 || ||||| || ||||| |||||| |||| ||| || ||||| | |||||||| Sbjct 92409 CCCTCGTCACGGGAGATCAGCTCGTTGGAGAAGGTGAGACCAGGCATCAACCCGCGCTTT 92350 Query 869240 TTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 869299 || | ||| || ||||||||||| || || ||||| ||||| || |||||| || ||| Sbjct 92349 TTCAACCAGAATATGGCGCAGAAGCTTCCGGAGAAGAAGATCCCTTCGACGCACGCGAAG 92290 Query 869300 CCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCCCAG 869359 ||||||| ||||| ||||||| || ||| || |||||| || ||||| Sbjct 92289 GCGATGAGACGCTCCGCAAAGGACTCCGAGCC------GTCGATCCAGCGCAGGGCCCAC 92236 Query 869360 TCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTTTCG 869419 | |||||| || ||| | || || || |||||||| | |||||| ||| ||| || Sbjct 92235 TGGGCCTTCTTAGCCACACAGGGGACGGTCTCGATGGCATGGAAGAGGCGGTGCTTCTCA 92176 Query 869420 GCCGGGTCCTTGACATAGGTGTC 869442 | | ||||||| ||||| || Sbjct 92175 TCTGAATCCTTGATGTAGGTCTC 92153 Score = 129 bits (142), Expect = 7e-24 Identities = 230/332 (69%), Gaps = 4/332 (1%) Strand=Plus/Minus Query 868678 GGACGAGACGTGCGCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCC 868737 |||| |||| ||||| |||||| || || | | ||||| || |||||||| || Sbjct 92737 GGACATGACGGAGGCCTTCTGGTACTCTCCGACCCTCTTTTCGAAGAAATTGGTCTTCCC 92678 Query 868738 CTCGAGCGAGATCAACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCA 868797 | | |||||||| ||||||||| |||||||| | |||||| |||| |||| Sbjct 92677 TTGCAACGAGATCAGCTCCATCCAATCAAACGGGTTCTGAACATTGTAGATCTTTCCGCA 92618 Query 868798 TCCGAGCGACGCGAGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGC 868857 ||||| || | | || | ||||| || |||||||||||||||| ||| || | | Sbjct 92617 TCCGAACGCGCCCAAGAGCCTATCGGCCACGAACTCGATGTACTGGCTCATCAGATCTCC 92558 Query 868858 GTTCATGCCGATGAGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGAC 868917 |||||| || | | ||| || |||| |||| ||| ||||| |||||||||| || Sbjct 92557 GTTCATCCCCACCAACGCGCATGGTAGCGCGTCGCACACGAACTCCCTCTCGATCTCCAC 92498 Query 868918 GGCCTCGACGATGATCTGCCTGGGCACGTCGGCCGA--GGGCTTGTTGACGAGCATCGTG 868975 || ||| || |||| ||| | | || | || | |||| || || | ||| Sbjct 92497 CGCGTCGCGGACGATC-CCCTTGACGCG-CTGCTCACTCAGCTTCTTCCTTAGGAGGGTG 92440 Query 868976 TAGAGCAGGCAGGCAAAGTCGCAGTGCAACCC 869007 || |||||||| || |||||||| |||| ||| Sbjct 92439 TATAGCAGGCACGCGAAGTCGCAATGCAGCCC 92408 >seq4953 Length=3437 Score = 141 bits (156), Expect = 1e-27 Identities = 184/249 (74%), Gaps = 4/249 (2%) Strand=Plus/Plus Query 869679 CCTCTGCCACTTGGACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGT 869738 |||| || || ||||||||||||||||||| ||| || || ||||| |||||||||| Sbjct 5 CCTCGGCGACCTGGACCTCCTTCATGAACCTGCCAGCGAGATTCTCCAAAACGATGCCGT 64 Query 869739 CGCTGGCGGCGAAAAAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCG 869798 | |||||| || || || |||| ||| || ||||| ||||||| || | Sbjct 65 CAGAGGCGGCAAAGAAGGCAAGGATGTGGGAAATGAAGTGTTTCTCGTCGGGAGAAAGGG 124 Query 869799 ACACCCAGTG-GACGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCC 869857 | |||| || || | ||| || |||||| ||||||||||||||||||| |||||| Sbjct 125 ATTCCCAATGAGAAAG-GTCCTCGGAGAGGTCAACCTCCTCGGCGGTCCAGAATGAGGCC 183 Query 869858 TCGGCCTTTTTGTACATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACA-AAGCG 869916 || || || |||||||| ||||||| || | |||| |||| ||||| | ||| || || Sbjct 184 TCAGCTTTCTTGTACATTTCCCATATTTCCGGGTACTGGATCGGGAACA-TACAGAAACG 242 Query 869917 GTTGGGGTT 869925 || ||||| Sbjct 243 GTCCGGGTT 251 >seq55453 Length=71163 Score = 95.1 bits (104), Expect = 1e-13 Identities = 90/113 (80%), Gaps = 4/113 (4%) Strand=Plus/Minus Query 1592186 GCCGCCAACTACCTCGACATCAA--GCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCA 1592243 || || ||||| | ||||||| ||||| || ||||| ||| || ||||||| Sbjct 29751 GCTGCAAACTATTTGAACATCAAAAGCCTC--CTGGATCTGACATGCCAGACTGTGGCGG 29694 Query 1592244 ACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAG 1592296 ||||||||||||| ||| | || |||||||||||||||||||||||||||||| Sbjct 29693 ACATGATCAAGGGAAAGACCCCAGAGGAGATCCGCAAGACCTTTAACATCAAG 29641 >seq9109 Length=5324 Score = 95.1 bits (104), Expect = 1e-13 Identities = 90/113 (80%), Gaps = 4/113 (4%) Strand=Plus/Minus Query 1592186 GCCGCCAACTACCTCGACATCAA--GCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCA 1592243 || || ||||| | ||||||| ||||| || ||||| ||| || ||||||| Sbjct 768 GCTGCAAACTATTTGAACATCAAAAGCCTC--CTGGATCTGACATGCCAGACTGTGGCGG 711 Query 1592244 ACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAG 1592296 ||||||||||||| ||| | || |||||||||||||||||||||||||||||| Sbjct 710 ACATGATCAAGGGAAAGACCCCAGAGGAGATCCGCAAGACCTTTAACATCAAG 658 >seq1878 Length=125641 Score = 93.3 bits (102), Expect = 5e-13 Identities = 87/111 (78%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 || || ||||| || |||||||| | |||| ||||| ||| || | ||||| || Sbjct 26436 GCTGCAAACTATCTGAACATCAAGAGTTTGCTGGATCTGACTTGCCAGACAGTGGCTGAC 26377 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAG 1592296 |||||||||||||| | |||||||| ||||||||||| || ||||||||| Sbjct 26376 ATGATCAAGGGCAAAACCCCCGAGGAAATCCGCAAGACATTCAACATCAAG 26326 >seq1512 Length=943511 Score = 91.5 bits (100), Expect = 2e-12 Identities = 119/165 (72%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 1592132 TGGGACAAGGAGTTTTGCGACGTCGAGCAGCCCACCCTCTTTGAGTTGATCCTCGCCGCC 1592191 |||||| ||||| ||| || || ||| |||| || || | | ||| | || || Sbjct 676022 TGGGACGCCGAGTTCGTCGAGGTTGACCAGGCCACTCTATTCGGTCTCATCATGGCTGCA 675963 Query 1592192 AACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAACATGATC 1592251 ||||| | |||||||| || || || || ||| | | ||||| ||||| || Sbjct 675962 GACTACTTGAACATCAAGAGCCTTCTGGAGCTGACATGCCAAACAGTGGCAGACATGTTC 675903 Query 1592252 AAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAG 1592296 ||||| ||| | || |||||||||||||||||||||||||||||| Sbjct 675902 AAGGGAAAGACCCCAGAGGAGATCCGCAAGACCTTTAACATCAAG 675858 >seq1801 Length=84476 Score = 87.8 bits (96), Expect = 2e-11 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 || || ||||| || |||||||| |||| ||||| ||| || ||||||| || Sbjct 23240 GCTGCAAACTATCTGAACATCAAGAGCTTGCTGGATCTGACTTGCCAGACTGTGGCTGAC 23181 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAG 1592296 |||||||||||||| | || ||||| ||||||||||| || ||||||||| Sbjct 23180 ATGATCAAGGGCAAAACTCCAGAGGAAATCCGCAAGACATTCAACATCAAG 23130 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6098456510344551