Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Juglans_20regia_20[refseq_20GCF_5F001411555.1_202015-10-22] 105,803 sequences; 699,672,627 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq1014 102 7e-17 seq1025 98.7 8e-16 seq55116 93.3 3e-14 seq1868 86.0 5e-12 >seq1014 Length=2264649 Score = 102 bits (112), Expect = 7e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| |||||||| || || || || || || ||||||||| | || ||| | Sbjct 109735 ATGCAGATATTTGTGAAGACATTGACTGGGAAGACCATTACCTTGGAGGTAGAGAGTTCT 109794 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || | | | || ||| |||||| ||||| ||||| | || |||||| Sbjct 109795 GACACGATTGATAATGTGAAAGCAAAGATTCAGGACAAGGAAGGAATCCCTCCGGATCAG 109854 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || || ||||| | ||||| |||||||| || |||| || || |||||||||||||| Sbjct 109855 CAGAGGCTTATCTTCGCGGGGAAACAGCTTGAAGATGGGAGGACTCTGGCGGATTACAAC 109914 Query 110453 ATTCAAAAAGAATCTACGTTGCAC 110476 || ||||| || ||||| |||||| Sbjct 109915 ATCCAAAAGGAGTCTACTTTGCAC 109938 >seq1025 Length=2429094 Score = 98.7 bits (108), Expect = 8e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || ||||| ||||| || || || || ||||||||| | || ||| | Sbjct 1182601 ATGCAGATCTTTGTGAAAACATTGACTGGGAAGACCATTACCTTGGAGGTCGAGAGTTCT 1182660 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| | | | || ||| |||||| ||||||||||| | || ||||| Sbjct 1182661 GATACAATTGATAATGTGAAAGCAAAGATTCAGGACAAAGAAGGAATACCTCCAGATCAG 1182720 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || || ||||| | ||||||||||||||| || |||| || || ||||||||||||| Sbjct 1182721 CAGAGGCTTATCTTTGCGGGTAAACAGCTTGAAGATGGAAGGACTCTGGCGGATTACAAT 1182780 Query 110453 ATTCAAAAAGAATCTACGTTGCAC 110476 || || || || || || ||||| Sbjct 1182781 ATACAGAAGGAGTCCACTCTGCAC 1182804 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || ||||| || ||| | ||||| ||||||||||| | || ||| | Sbjct 1182373 ATGCAGATTTTTGTGAAGACTCTGACCGGAAAAACCATTACATTGGAGGTCGAGAGTTCG 1182432 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || | | | | || || ||||||| ||||||||||| | || ||||| Sbjct 1182433 GACACAATTGACAATGTCAAGGCGAAGATTCAGGACAAAGAAGGTATTCCACCAGATCAG 1182492 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 ||||| ||||| | ||| || || ||||| || || | || || | || |||||||| Sbjct 1182493 CAAAGGCTTATCTTTGCAGGCAAGCAGCTTGAAGACGGGAGGACTCTTGCAGATTACAAT 1182552 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 ||||| || || ||||| | || ||||| | | ||||| || || Sbjct 1182553 ATTCAGAAGGAGTCTACCCTTCATCTGGTGCTGCGCCTGCGTGGTGG 1182599 >seq55116 Length=591887 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || ||||||||||| | ||||| || || ||||| | ||| ||| | | Sbjct 230425 ATGCAGATTTTTGTCAAAACGCTCACCGGAAAGACTATTACTCTTGAAGTTGAGAGTTCC 230366 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || | | | || || || ||| ||||||||||| | ||| ||||| Sbjct 230365 GACACCATTGATAACGTGAAGGCAAAAATTCAGGACAAAGAAGGAATTCCCCCAGATCAG 230306 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || || || |||| |||||| || ||||| ||||||| | |||| |||| ||||| || Sbjct 230305 CAGAGGCTGATTTTTGCGGGAAAGCAGCTCGAGGATGGCCGAACTTTGGCTGATTATAAT 230246 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGT 110481 ||||| || || ||||| | ||| |||| Sbjct 230245 ATTCAGAAGGAGTCTACACTCCACCTGGT 230217 >seq1868 Length=298818 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || || |||||||| | ||||| || ||||| ||| |||| ||| | | Sbjct 224155 ATGCAGATCTTCGTCAAAACCCTCACCGGGAAGACCATCACCCTCGAGGTCGAGAGTTCC 224214 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| ||| | | ||||| ||||| ||||| |||||| | || ||||| Sbjct 224215 GATACCATCGACAACGTAAAGGCCAAGATCCAAGACAAGGAAGGCATTCCTCCTGATCAG 224274 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || || || || | || || || || ||||||||| | || | || ||||||||| Sbjct 224275 CAGAGGCTCATCTTCGCCGGGAAGCAATTGGAGGATGGGCGTACCCTCGCCGATTACAAC 224334 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTG 110482 || || || || || || |||||| ||||| Sbjct 224335 ATACAGAAGGAGTCGACTTTGCACCTGGTG 224364 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412309251464879