Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Juglans_20regia_20[refseq_20GCF_5F001411555.1_202015-10-22] 105,803 sequences; 699,672,627 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq54992 170 3e-36 seq50617 161 2e-33 seq4953 141 1e-27 seq1147 129 9e-24 seq55670 113 7e-19 seq55714 87.8 3e-11 seq55453 87.8 3e-11 seq49241 87.8 3e-11 seq9109 87.8 3e-11 seq1512 87.8 3e-11 >seq54992 Length=480207 Score = 170 bits (188), Expect = 3e-36 Identities = 230/318 (72%), Gaps = 8/318 (3%) Strand=Plus/Plus Query 794347 TCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTCTTGAGC 794406 |||||| ||||| |||||| ||| || |||||||| | |||||||||||| | | Sbjct 460114 TCGCGA--GATCAGCTCGTTGGAGAAGGTCAGACCGGGCATCAAGCCGCGCTTCTTCAAC 460171 Query 794407 CAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAGCCGACG 794466 || |||||||| ||||| || || ||||| ||||| || || || || || ||||| Sbjct 460172 CAGAAGATGGCGCAGAAGCTTCCGGAGAAGAAGATACCTTCTACACACGCGAAAGCGACG 460231 Query 794467 AGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCACTCTGCC 794526 | ||||| || || | || ||||| || |||||| || ||||||| |||| Sbjct 460232 ATGCGCTCAGCGAAGGACTC--GGCCCC----GTCGATCCAGCGCAGGGCCCACTGTGCC 460285 Query 794527 TTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTCGACCGGG 794586 || || || | || || || ||||||||| | |||||| ||| ||||| | | | | Sbjct 460286 TTCTTAGCGACGCAAGGGACGGTCTCGATGGCGTGGAAGAGGCGGTGCTTCTGGGCGGAG 460345 Query 794587 TCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCGATGGCG 794646 ||||||| |||||| |||| | || ||| |||| ||||| || || ||||||||| Sbjct 460346 TCCTTGATGTAGGTCTCGAGCAAAAGACTGTACATCTCGGAGTGAATATTCTCGATGGCG 460405 Query 794647 ATCTGGAAGCCATAAAAG 794664 ||||||||||| || ||| Sbjct 460406 ATCTGGAAGCCGTAGAAG 460423 Score = 141 bits (156), Expect = 1e-27 Identities = 174/233 (75%), Gaps = 6/233 (3%) Strand=Plus/Plus Query 796149 GGCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCC 796208 |||||||| || ||||||||||||||||| | ||| || || ||||| |||||||| Sbjct 460429 GGCCTCGGCGACCTGGACCTCCTTCATGAACCTGCCAGCGAGATTCTCCAAAACGATGCC 460488 Query 796209 GTCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAG 796268 ||| |||||| || ||||| |||| ||| || ||||| ||||||| || Sbjct 460489 GTCAGAGGCGGCAAAGAAGGCAAGGATGTGGGAAATGAAGTGTTTCTCGTCGGGAGAAAG 460548 Query 796269 CGAGACCCAGTG-GACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAGG 796327 || |||| || || | ||| || |||||| ||||||||||||||||| || |||| Sbjct 460549 GGATTCCCAATGAGAAAG-GTCCTCGGAGAGGTCAACCTCCTCGGCGGTCCAGAATGAGG 460607 Query 796328 CCTCGGCCTTTTTGTACATCTCCCATA--TCCGTTGGTAGCGGATGGGGAACA 796378 |||| || || |||||||| ||||||| |||| |||| |||| ||||||| Sbjct 460608 CCTCAGCTTTCTTGTACATTTCCCATATTTCCG--GGTACTGGATCGGGAACA 460658 >seq50617 Length=115889 Score = 161 bits (178), Expect = 2e-33 Identities = 230/324 (71%), Gaps = 6/324 (2%) Strand=Plus/Minus Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400 || ||||| || ||||| |||||| ||| ||| || ||||| | |||||||| Sbjct 92409 CCCTCGTCACGGGAGATCAGCTCGTTGGAGAAGGTGAGACCAGGCATCAACCCGCGCTTT 92350 Query 794401 TTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 794460 || | ||| || ||||| ||||| || || ||||| ||||| || |||||| || ||| Sbjct 92349 TTCAACCAGAATATGGCGCAGAAGCTTCCGGAGAAGAAGATCCCTTCGACGCACGCGAAG 92290 Query 794461 CCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCAC 794520 ||| ||| ||||| ||||| | ||| ||| || |||||| || |||||| Sbjct 92289 GCGATGAGACGCTCCGCAAAGGACTCCGAGCCGTC------GATCCAGCGCAGGGCCCAC 92236 Query 794521 TCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTCG 794580 | ||||| || ||| |||| || || |||||||| | |||||| ||| |||||| Sbjct 92235 TGGGCCTTCTTAGCCACACAGGGGACGGTCTCGATGGCATGGAAGAGGCGGTGCTTCTCA 92176 Query 794581 ACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCG 794640 | | ||||||| |||||| || | | || || |||| ||||| || |||||| Sbjct 92175 TCTGAATCCTTGATGTAGGTCTCCAGCAACAGACTATACATCTCGGAGTGAATATTTTCG 92116 Query 794641 ATGGCGATCTGGAAGCCATAAAAG 794664 ||||| ||||||||||| || ||| Sbjct 92115 ATGGCAATCTGGAAGCCGTAGAAG 92092 Score = 131 bits (144), Expect = 3e-24 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 796149 GGCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCC 796208 |||||||| || ||||||||||||||||| | || || |||||||| |||||||| Sbjct 92086 GGCCTCGGCAACCTGGACCTCCTTCATGAACCTCCCAGCGAGGTTCTCCAAAACGATGCC 92027 Query 796209 GTCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAG 796268 || || || || || || |||||||| |||||||| ||||||| | |||| Sbjct 92026 ATCTGAAGCTGCAAAGAAAGCTAGGACGTGGGAAATAAAGTGTTTCTCGTCGGGGGTGAG 91967 Query 796269 CGAGACCCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAGGC 796328 | |||| ||| ||| |||||| ||||||||||| ||||| || ||||| Sbjct 91966 GGCTTCCCATTGGCGGAGGTCCTGAGAGAGGTCAACCTCCTCGGCAGTCCAGAAAGAGGC 91907 Query 796329 CTCGGCCTTTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAACA 796378 |||||| || ||||||||||||||||| |||| |||| || |||| Sbjct 91906 CTCGGCTTTCTTGTACATCTCCCATATTTCGGGGTACTGGATCGGAAACA 91857 >seq4953 Length=3437 Score = 141 bits (156), Expect = 1e-27 Identities = 174/233 (75%), Gaps = 6/233 (3%) Strand=Plus/Plus Query 796149 GGCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCC 796208 |||||||| || ||||||||||||||||| | ||| || || ||||| |||||||| Sbjct 3 GGCCTCGGCGACCTGGACCTCCTTCATGAACCTGCCAGCGAGATTCTCCAAAACGATGCC 62 Query 796209 GTCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAG 796268 ||| |||||| || ||||| |||| ||| || ||||| ||||||| || Sbjct 63 GTCAGAGGCGGCAAAGAAGGCAAGGATGTGGGAAATGAAGTGTTTCTCGTCGGGAGAAAG 122 Query 796269 CGAGACCCAGTG-GACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAGG 796327 || |||| || || | ||| || |||||| ||||||||||||||||| || |||| Sbjct 123 GGATTCCCAATGAGAAAG-GTCCTCGGAGAGGTCAACCTCCTCGGCGGTCCAGAATGAGG 181 Query 796328 CCTCGGCCTTTTTGTACATCTCCCATA--TCCGTTGGTAGCGGATGGGGAACA 796378 |||| || || |||||||| ||||||| |||| |||| |||| ||||||| Sbjct 182 CCTCAGCTTTCTTGTACATTTCCCATATTTCCG--GGTACTGGATCGGGAACA 232 >seq1147 Length=783269 Score = 129 bits (142), Expect = 9e-24 Identities = 169/234 (72%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 1485475 TTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGATC 1485534 ||||||||||||||||| || || |||||||||||| | |||| || || ||| | Sbjct 113005 TTGGTGACGGCCTTGGTCCCTTCAGAGACGGCGTGCTTAGCCAACTCACCAGGCAGCACG 112946 Query 1485535 AGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCGCGCC 1485594 |||||||| |||||||||||||| |||| | |||||| |||||| | ||| Sbjct 112945 AGGCGCACTGCGGTCTGGATCTCCCGGGAGGTGATCGTAGGCTTCTTGTTGTATCTGGCC 112886 Query 1485595 AGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGATC 1485654 || || ||||| | ||| |||| |||||||| | || |||||||||| Sbjct 112885 AGCCGCGAAGCCTCCTGGGCGAGCTTCTCGAAGATGTCGTTAATGAAACTGTTCATGATC 112826 Query 1485655 GACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 ||| | ||| | ||||| || | |||||| || |||||||||||||||||| Sbjct 112825 CCCATAGCCTTGCTTGAGATCCCAATGTCGGGATGGACCTGCTTGAGCACCTTG 112772 >seq55670 Length=972380 Score = 113 bits (124), Expect = 7e-19 Identities = 171/240 (71%), Gaps = 10/240 (4%) Strand=Plus/Minus Query 1485473 ACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGA 1485532 |||||||||| |||||||| |||||||| |||||||| |||| || || || ||| | Sbjct 140580 ACTTGGTGACCGCCTTGGTCCCCTCTGAAACGGCGTGTTTGGCGAGCTCACCAGGCAGCA 140521 Query 1485533 TCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTG---C 1485589 |||||||| |||||||||||||| |||| | || || || |||| || || | Sbjct 140520 CGAGGCGCACTGCGGTCTGGATCTCCCGGGAGGTGA---TGGTGGGCTTTTTGTTGTACC 140464 Query 1485590 GCGCCAGGCGGCCGGCCTC--GGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTT 1485647 || || || |||||| || | | | | |||| || || || | || ||| Sbjct 140463 TGGCGAGTCGAGAGGCCTCCTGGGCCAGCTTC--TCGAAAATATCATTTATGAAGCTGTT 140406 Query 1485648 CATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTT 1485707 ||||||| ||| | ||| ||||||| || | ||| ||||| |||||||| || ||||| Sbjct 140405 CATGATCCCCATAGCCTTGCTGGAGATCCCGATGTCCGGGTGAACCTGCTTCAGAACCTT 140346 >seq55714 Length=781223 Score = 87.8 bits (96), Expect = 3e-11 Identities = 69/83 (83%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 1485475 TTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGATC 1485534 ||||||||||||||||||||||| |||| ||| ||| | |||||||| ||| ||| | | Sbjct 648759 TTGGTGACGGCCTTGGTACCCTCAGAGATGGCATGCTTAGCCAGTTCACCGAGCAGCACC 648818 Query 1485535 AGGCGCACGGCGGTCTGGATCTC 1485557 | |||||||||||| |||||| Sbjct 648819 AAATGCACGGCGGTCTAGATCTC 648841 >seq55453 Length=71163 Score = 87.8 bits (96), Expect = 3e-11 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 2035647 GCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAAC 2035706 || || ||||| | ||||||| |||||| ||| || ||| |||| ||||| || Sbjct 29751 GCTGCAAACTATTTGAACATCAAAAGCCTCCTGGATCTGACATGCCAGACTGTGGCGGAC 29692 Query 2035707 CTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATCAAG 2035757 | |||||||| ||| | || ||||| |||||||||||||||||||||||| Sbjct 29691 ATGATCAAGGGAAAGACCCCAGAGGAGATCCGCAAGACCTTTAACATCAAG 29641 >seq49241 Length=21568 Score = 87.8 bits (96), Expect = 3e-11 Identities = 69/83 (83%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 1485475 TTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGATC 1485534 ||||||||||||||||||||||| |||| ||| ||| | |||||||| ||| ||| | | Sbjct 17197 TTGGTGACGGCCTTGGTACCCTCAGAGATGGCATGCTTAGCCAGTTCACCGAGCAGCACC 17256 Query 1485535 AGGCGCACGGCGGTCTGGATCTC 1485557 | |||||||||||| |||||| Sbjct 17257 AAATGCACGGCGGTCTAGATCTC 17279 >seq9109 Length=5324 Score = 87.8 bits (96), Expect = 3e-11 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 2035647 GCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAAC 2035706 || || ||||| | ||||||| |||||| ||| || ||| |||| ||||| || Sbjct 768 GCTGCAAACTATTTGAACATCAAAAGCCTCCTGGATCTGACATGCCAGACTGTGGCGGAC 709 Query 2035707 CTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATCAAG 2035757 | |||||||| ||| | || ||||| |||||||||||||||||||||||| Sbjct 708 ATGATCAAGGGAAAGACCCCAGAGGAGATCCGCAAGACCTTTAACATCAAG 658 >seq1512 Length=943511 Score = 87.8 bits (96), Expect = 3e-11 Identities = 108/148 (73%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 2035610 CGAGGTCGACCAACCCACCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAA 2035669 |||||| ||||| |||| || || | | ||| | || || ||||| | ||||||| Sbjct 676005 CGAGGTTGACCAGGCCACTCTATTCGGTCTCATCATGGCTGCAGACTACTTGAACATCAA 675946 Query 2035670 GCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAACCTTATCAAGGGCAAGTCGCCCGA 2035729 | ||| || || || ||| | || ||||| || | ||||||| ||| | || || Sbjct 675945 GAGCCTTCTGGAGCTGACATGCCAAACAGTGGCAGACATGTTCAAGGGAAAGACCCCAGA 675886 Query 2035730 GGACATCCGCAAGACCTTTAACATCAAG 2035757 ||| |||||||||||||||||||||||| Sbjct 675885 GGAGATCCGCAAGACCTTTAACATCAAG 675858 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7904991652322517