Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Juglans_20regia_20[refseq_20GCF_5F001411555.1_202015-10-22] 105,803 sequences; 699,672,627 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq1025 102 6e-17 seq1014 102 6e-17 seq55116 98.7 8e-16 seq49365 96.9 3e-15 seq1868 86.0 5e-12 >seq1025 Length=2429094 Score = 102 bits (112), Expect = 6e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || ||||| ||||| || || || || ||||||||| | || ||| | Sbjct 1182601 ATGCAGATCTTTGTGAAAACATTGACTGGGAAGACCATTACCTTGGAGGTCGAGAGTTCT 1182660 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| | | | || ||| ||||||| || |||||||| | || |||||| Sbjct 1182661 GATACAATTGATAATGTGAAAGCAAAGATTCAGGACAAAGAAGGAATACCTCCAGATCAG 1182720 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| ||||| | ||||||||||||||| || || | | || ||||||| ||||| Sbjct 1182721 CAGAGGCTTATCTTTGCGGGTAAACAGCTTGAAGATGGAAGGACTCTGGCGGATTACAAT 1182780 Query 107736 ATTCAAAAGGAGTCTACGTTGCAC 107759 || || |||||||| || ||||| Sbjct 1182781 ATACAGAAGGAGTCCACTCTGCAC 1182804 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTG 107613 |||||| ||||||||||| || || || || ||||||||||| | || ||| ||| Sbjct 1182144 AATGCAGATTTTTGTCAAGACCTTGACTGGAAAAACCATTACTTTGGAGGTTGAGAGCTC 1182203 Query 107614 GCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATC 107673 |||||| | | | || || |||||| || |||||||| | || || | Sbjct 1182204 -CGATACCATTGATAATGTGAAGGCTAAGATTCAAGACAAAGAAGGTATCCCACCAGACC 1182262 Query 107674 AGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACA 107733 ||||||| | |||| ||| || || ||| | ||||| | || | || || |||| Sbjct 1182263 AGCAGAGGTTGATTTTTGCTGGCAAGCAGTTAGAGGATGGACGGACCTTAGCCGATTACA 1182322 Query 107734 ACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 | ||||||||||| || || |||||| ||||| || | |||||||| || Sbjct 1182323 ATATTCAAAAGGAATCGACTTTGCACTTGGTGCTGCGTTTGCGAGGAGG 1182371 >seq1014 Length=2264649 Score = 102 bits (112), Expect = 6e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || ||||| || || || || || || ||||||||| | || ||| | Sbjct 109735 ATGCAGATATTTGTGAAGACATTGACTGGGAAGACCATTACCTTGGAGGTAGAGAGTTCT 109794 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || | | | || ||| ||||||| || || ||||| | || ||||||| Sbjct 109795 GACACGATTGATAATGTGAAAGCAAAGATTCAGGACAAGGAAGGAATCCCTCCGGATCAG 109854 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| ||||| | ||||| |||||||| || || | | || ||||||| |||||| Sbjct 109855 CAGAGGCTTATCTTCGCGGGGAAACAGCTTGAAGATGGGAGGACTCTGGCGGATTACAAC 109914 Query 107736 ATTCAAAAGGAGTCTACGTTGCAC 107759 || |||||||||||||| |||||| Sbjct 109915 ATCCAAAAGGAGTCTACTTTGCAC 109938 Score = 89.7 bits (98), Expect = 4e-13 Identities = 160/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAA-ACGGAGGCTG 107613 ||||||||||||||| || || | ||||| ||||| || ||| | ||| | | ||| Sbjct 109050 AATGCAAATTTTTGTGAAGACGCTGACAGGAAAAACTATAACCTTGGAAGTTGAAAGCTC 109109 Query 107614 GCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATC 107673 | |||||| | | | | || || ||||||| || || || || | || || | Sbjct 109110 G-GATACTATAGACAATGTGAAGGCAAAGATTCAGGACAAGGAGGGAATCCCACCAGACC 109168 Query 107674 AGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACA 107733 ||||||| | |||| ||| || || || || || || | | || | || ||||| | Sbjct 109169 AGCAGAGGTTGATTTTTGCTGGGAAGCAACTAGAAGATGGAAGGACTCTTGCTGACTATA 109228 Query 107734 ACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAA 107784 ||||||| |||||||| || |||||| ||||| | | |||| || |||| Sbjct 109229 ACATTCAGAAGGAGTCCACCTTGCACTTGGTGCTTCGGCTGCGTGGTGGAA 109279 >seq55116 Length=591887 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| |||||||||||||| | || || || || ||||| | ||| ||| | | Sbjct 230425 ATGCAGATTTTTGTCAAAACGCTCACCGGAAAGACTATTACTCTTGAAGTTGAGAGTTCC 230366 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || | | | || || ||| ||| || |||||||| | ||| |||||| Sbjct 230365 GACACCATTGATAACGTGAAGGCAAAAATTCAGGACAAAGAAGGAATTCCCCCAGATCAG 230306 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| || |||| |||||| || ||||| ||||| | | ||| |||| || || || Sbjct 230305 CAGAGGCTGATTTTTGCGGGAAAGCAGCTCGAGGATGGCCGAACTTTGGCTGATTATAAT 230246 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGT 107764 ||||| ||||||||||| | ||| |||| Sbjct 230245 ATTCAGAAGGAGTCTACACTCCACCTGGT 230217 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| |||||||| |||||| | ||||| || || || ||| | ||| || | Sbjct 230197 ATGCAGATTTTTGTTAAAACTCTTACAGGAAAGACAATCACCTTGGAAGTTGAAAGTTCA 230138 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | || ||| |||||| || || ||||| | || |||||| Sbjct 230137 GACACAATCGATAATGTGAAAGCAAAGATACAAGACAAGGAAGGTATTCCTCCAGATCAG 230078 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 |||||| | || | ||| || || ||||| ||||| | |||| |||| |||||||| Sbjct 230077 CAGAGATTGATATTTGCAGGAAAGCAGCTTGAGGATGGACGAACATTGGCTGACTACAAT 230018 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGT 107764 || || || || || || |||||| |||| Sbjct 230017 ATCCAGAAAGAATCCACTTTGCACTTGGT 229989 >seq49365 Length=33059 Score = 96.9 bits (106), Expect = 3e-15 Identities = 150/212 (71%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTG 107613 ||||||||| || ||||| || || ||||| || || || ||| | || |||| ||| Sbjct 27444 AATGCAAATCTTCGTCAAGACCTTGACAGGGAAGACGATCACCCTGGAGGTGGAGAGCTC 27503 Query 107614 GCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATC 107673 | || || ||| | | || || ||||| || || || ||| | ||| ||| | Sbjct 27504 G-GACACCATCGACAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGACC 27562 Query 107674 AGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACA 107733 ||||||| ||||||| || || || ||||||||||||| | ||| | || || || | Sbjct 27563 AGCAGAGGCTTATTTTCGCCGGCAAGCAGCTGGAGGACGGCCGAACCCTCGCCGATTATA 27622 Query 107734 ACATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 | || ||||||||||| || | ||| ||||| Sbjct 27623 ATATCCAAAAGGAGTCCACCCTCCACCTGGTG 27654 >seq1868 Length=298818 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/226 (69%), Gaps = 2/226 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || |||||||| | || || || ||||| ||| |||| ||| | | Sbjct 224155 ATGCAGATCTTCGTCAAAACCCTCACCGGGAAGACCATCACCCTCGAGGTCGAGAGTTCC 224214 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| ||| | | ||||| ||||| || || |||||| | || |||||| Sbjct 224215 GATACCATCGACAACGTAAAGGCCAAGATCCAAGACAAGGAAGGCATTCCTCCTGATCAG 224274 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| || || | || || || || ||||||| | || | || || |||||| Sbjct 224275 CAGAGGCTCATCTTCGCCGGGAAGCAATTGGAGGATGGGCGTACCCTCGCCGATTACAAC 224334 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGG 107781 || || |||||||| || |||||| ||||| | |||| |||||| Sbjct 224335 ATACAGAAGGAGTCGACTTTGCACCTGGTGCTCCGATT--GAGGGG 224378 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398362458712267