Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Juglans_20regia_20[refseq_20GCF_5F001411555.1_202015-10-22] 105,803 sequences; 699,672,627 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq1014 96.9 5e-15 seq55116 87.8 3e-12 >seq1014 Length=2264649 Score = 96.9 bits (106), Expect = 5e-15 Identities = 139/196 (71%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| ||||| | || || |||| ||||| ||||| || |||| || ||| | Sbjct 108596 TGCAGATATTTGTTAAGACTCTAACCGGAAAGACAATCACCCTTGAGGTGGAAAGCTCGG 108655 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | |||||| | ||||||||| ||||| || || || ||||||||||| || || | Sbjct 108656 ACACTATTGACAATGTAAAAGCCAAAATCCAGGACAAGGAGGGCATTCCACCGGACCAGC 108715 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | || ||||| ||||| ||||| || | || ||| | | || || | || ||||| | Sbjct 108716 AGAGGCTCATCTTTGCTGGTAAGCAGCTCGAAGATGGTCGCACTTTGGCTGACTATAACA 108775 Query 146212 TACAAAAAGAATCGAC 146227 | ||||||||||| || Sbjct 108776 TCCAAAAAGAATCCAC 108791 >seq55116 Length=591887 Score = 87.8 bits (96), Expect = 3e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||||||| | || || | || || || ||||| || |||| || ||| | | Sbjct 229512 TGCAAATATTCGTGAAGACGCTGACGGGCAAGACAATCACACTTGAGGTGGAAAGTTCTG 229453 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| | ||||| ||| ||| || ||| || || || || ||||| ||||| | Sbjct 229452 ATACCATTGACAATGTGAAAGCTAAGATTCAAGACAAGGAGGGGATCCCACCTGATCAGC 229393 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | || ||||| |||||||| || || | || ||| | | || | ||||||| |||| Sbjct 229392 AGAGGCTCATCTTTGCAGGAAAGCAGCTTGAGGATGGTCGCACACTGGCAGATTACAATA 229333 Query 146212 TACAAAAAGAA 146222 | || || ||| Sbjct 229332 TCCAGAAGGAA 229322 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 785126665454760