Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Juglans_20regia_20[refseq_20GCF_5F001411555.1_202015-10-22] 105,803 sequences; 699,672,627 total letters Query= NC_023584.1 Length=170438 Score E Sequences producing significant alignments: (Bits) Value seq1861 394 1e-104 seq47040 122 9e-23 seq54963 118 1e-21 >seq1861 Length=68153 Score = 394 bits (436), Expect = 1e-104 Identities = 677/977 (69%), Gaps = 18/977 (2%) Strand=Plus/Plus Query 158775 TTTGACATACTCGACGACTGGCTTAAACGGGATCGTTTCGTTTTTGTTGGCTGGTCTGGA 158834 ||||| || | || |||||| | |||| | |||||||||||| || ||||| || Sbjct 26949 TTTGATATTATGGATGACTGGTTACGGAGGGACCATTTCGTTTTTGTAGGTTGGTCCGGT 27008 Query 158835 CTTCTTCTTCTACCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGCACGACTTTC 158894 || | || | || ||| ||| |||| | || |||||| |||| || || || || Sbjct 27009 CTATTACTCTTTCCTTGTGCCTATTTTGCCTTAGGGGGTTGGTTTACAGGTACAACCTTT 27068 Query 158895 GCTACGAGCTGGTATACACATGGACTCGCTACTTCCTATCTTGAGGG-TGCAAACTTTCT 158953 | || | ||||||||| ||| | || | ||||||| | || || ||||| ||| | Sbjct 27069 GTAACTTCATAGTATACACACGGATTGGCGAGTTCCTATTTGGAAGGCTGCAA-CTTCTT 27127 Query 158954 TACAGCAGCAGTTTCGACTCCAGCTGATGCTATGGGTCATTCTCTTCTGCTTCTCTGGGG 159013 || || |||||||| |||| ||| || | | | || ||| | || | || ||||| Sbjct 27128 AACCGCTGCAGTTTCTACTCTCGCTAATAGTTTAGCACACTCTTTGTTGTTACTATGGGG 27187 Query 159014 TCCTGAGGCTCAAGGGGATTTCGTCAGGTGGGTCCAACTTGGGGGACTCTGGAATTTTGT 159073 ||| || | ||||| ||||| | ||| ||| | || | || |||| |||||| Sbjct 27188 TCCAGAAACACAAGGAGATTTTACTTGTTGGTGTCAATTAGGTAGTCTGTGGACTTTTGT 27247 Query 159074 GGCGCTCCACGGTGCCTTTGCCCTAATTGGTTTCATGCTTCGCCAGTTTGAACTGGCACG 159133 || ||| || ||||| ||| ||| | | || |||||||||| || || Sbjct 27248 TGCTCTC-----------TGGACTAATAGGTCTCACGTTACGTTAGTTTGAACTTGCTCG 27296 Query 159134 -TCTCATCGGTATCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTG 159192 ||| || | | || || || ||||| || || ||||||| ||| |||||| ||||| Sbjct 27297 ATCTGTTCAAT-TGCGACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTTTTTTTT 27355 Query 159193 TCAGCGTCTTCCTTATCTACCCACTTGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTG 159252 | || || || || || | ||| ||||| || ||||||| || | || ||||| Sbjct 27356 TTTTGGTATTGCTGATTTATCTACTAGGTCAATCGGGTTGGTTCTTTGTGCCTAGCTTTG 27415 Query 159253 GGGTGGCCGCAATATT-CAGGTTCCTACTCTTCCTACAAGGGTTCCACAATTGGACACTA 159311 | || || || ||||| || ||| | ||||| | ||||||| || ||||||||| | Sbjct 27416 GTGTAGCAGCTATATTTCA--TTCTTTCTCTTTTTCTAAGGGTTTCATAATTGGACATTG 27473 Query 159312 AACCCCTTCCATATGATGGGAGTTGCTGGTATCCTAGGTGGAGCACTTCTATCTGCTATT 159371 ||||| || ||||||||||| ||||||||| | | || | || || |||| | |||| Sbjct 27474 AACCCATTTCATATGATGGGGGTTGCTGGTGTAATTGGCGCTGCTCTGCTATGCGTTATT 27533 Query 159372 CATGGGGTCACAGTTGAAAATACATTATACGAGGATGGAGAACAAGCAAACACCTTTAAG 159431 ||||| | || | |||| ||| |||| || ||||| || ||||| || ||| Sbjct 27534 CATGGTGCTACCTTAGAAAGTACTTTATTTGAAGATGGTGATGGTGCAAATACATTTTGT 27593 Query 159432 GCGTTTGATTCAACTCAAGAGGAGGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGG 159491 || ||| | ||||||||| || || |||||||| |||||||| || |||| ||| ||| Sbjct 27594 GCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAACCACTTTTGG 27653 Query 159492 TCGCAGATCTTCGGCATTGCGTTTTCTAACAAGCGGTGGCTTCATTTCTTTATGTTGTTT 159551 || || ||||| || || | ||||| || || || ||| | |||||| ||||| | ||| Sbjct 27654 TCCCAAATCTTTGGGGTTACTTTTTCCAATAAACGTTGGTTACATTTCCTTATGCTATTT 27713 Query 159552 GTGCCTGTTATGGGTCTATGGACATCCAGTATTGGCATTATTGGTCTTGCTCTCAATCTT 159611 || | || | || |||||| | |||| | | ||||| ||||| || || Sbjct 27714 GTACTAGTAACCAGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTGGCTCTGAACCTA 27773 Query 159612 CGTGCTTACGATTTCGTGAGTCAAGAGATCAGAGCAGCAGAAGATCCAGAATTTGAAACG 159671 ||||| || || || || ||| || ||| | |||| ||||||||| |||||||| || Sbjct 27774 CGTGCCTATGACTTTGTTTCTCAGGAAATCCGTGCAGTAGAAGATCCTGAATTTGAGACT 27833 Query 159672 TTCTACACCAAGAACATTCTTCTGAATGAAGGACTACGTGCTTGGTTGGCACCTGCTGAT 159731 |||||||| || || |||||| | |||||||| | | ||||||| ||| || ||| Sbjct 27834 TTCTACACAAAAAATATTCTTTTAAATGAAGGTATTCATGCTTGGATGGAGGCTCAAGAT 27893 Query 159732 CAACCCCATGAAAACTT 159748 || || ||||||||||| Sbjct 27894 CAGCCTCATGAAAACTT 27910 >seq47040 Length=8764 Score = 122 bits (134), Expect = 9e-23 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 157435 GTTGCCTACTCGGCACCAGTCGCTGCTGCGAGTGCAGTATTCCTCGTCTATCCTTTCGGT 157494 ||||| || || || || || || ||||| | | | || ||| | ||||||| | ||| Sbjct 5687 GTTGCATATTCAGCTCCTGTTGCAGCTGCTACTACTGTTTTCTTGATCTATCCAATTGGT 5628 Query 157495 CAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGCTC 157554 ||||| || || | | || |||||| || || ||||||||||| |||| ||| | Sbjct 5627 CAAGGAAGCTTTTCTCACGGTAAGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATT 5568 Query 157555 GTCTTCCAGGCAGAGCACAATATTCTTATGCATCCGTTCCACATGCTCGGCGTTGCTGGG 157614 || |||||||| |||||||| || |||||||| || || || ||| | || || ||||| Sbjct 5567 GTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCATATGTTAGGTGTAGCTGGT 5508 Query 157615 GTATTCGGTGGATCTTTGTTCTCTGCTATGCACGG 157649 |||||||| || | | || ||||||||| || Sbjct 5507 GTATTCGGCGGCTTCCTATTTAGTGCTATGCATGG 5473 >seq54963 Length=251348 Score = 118 bits (130), Expect = 1e-21 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 157435 GTTGCCTACTCGGCACCAGTCGCTGCTGCGAGTGCAGTATTCCTCGTCTATCCTTTCGGT 157494 ||||| || || || || || | ||||| | ||| || || | ||||||| | ||| Sbjct 117193 GTTGCATATTCAGCTCCTGTTGTAGCTGCTACTGCTGTTTTATTGATCTATCCAATTGGT 117252 Query 157495 CAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGCTC 157554 ||||| || || || | ||||||||| || || ||||||||||| |||| ||| | Sbjct 117253 CAAGGAAGCTTTTCTGACGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATT 117312 Query 157555 GTCTTCCAGGCAGAGCACAATATTCTTATGCATCCGTTCCACATGCTCGGCGTTGCTGGG 157614 || |||||||| |||||||| || |||||||| || || |||||| | | || ||| Sbjct 117313 GTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTACGTGTAATTGGT 117372 Query 157615 GTATTCGGTGGATCTTTGTTCTCTGCTATGCACGG 157649 |||||||| || || | || || |||||| || Sbjct 117373 GTATTCGGCGGCTCCCTATTTAGTGTTATGCATGG 117407 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 544552455216240