Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Juglans_20regia_20[refseq_20GCF_5F001411555.1_202015-10-22] 105,803 sequences; 699,672,627 total letters Query= NC_023587.1 Length=189311 Score E Sequences producing significant alignments: (Bits) Value seq1861 405 6e-108 seq47040 158 1e-33 seq54963 154 2e-32 seq54898 87.8 2e-12 seq1126 87.8 2e-12 >seq1861 Length=68153 Score = 405 bits (448), Expect = 6e-108 Identities = 672/966 (70%), Gaps = 16/966 (2%) Strand=Plus/Plus Query 178949 TGGATGACTGGCTTAATCGGGATCGCTTTGTCTTTGTGGGTTGGTCTGGACTCCTACTTC 179008 ||||||||||| | |||| | || || ||||| |||||||| || || |||| Sbjct 26959 TGGATGACTGGTTACGGAGGGACCATTTCGTTTTTGTAGGTTGGTCCGGTCTATTACTCT 27018 Query 179009 TTCCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGGACAGCTTTTGTTACGAGTT 179068 |||| ||| ||| ||||| | || |||||| |||| || ||| | ||||| || | Sbjct 27019 TTCCTTGTGCCTATTTTGCCTTAGGGGGTTGGTTTACAGGTACAACCTTTGTAACTTCAT 27078 Query 179069 GGTACACCCATGGTCTTGCTAGTTCCTATCTTGAAGG-TGCTAACTTTCTTACGGCAGCT 179127 ||| || || || | || ||||||||| | ||||| ||| ||||| | || || || Sbjct 27079 AGTATACACACGGATTGGCGAGTTCCTATTTGGAAGGCTGC-AACTTCTTAACCGCTGCA 27137 Query 179128 GTCTCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCT 179187 || || || | ||| || | | | || ||| | | |||| |||||||| || | Sbjct 27138 GTTTCTACTCTCGCTAATAGTTTAGCACACTCTTTGTTGTTACTATGGGGTCCAGAAACA 27197 Query 179188 CAGGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTATGGAATTTCGTGGCTCTCCAC 179247 || || |||| | ||||| ||| | || | || |||| ||| || |||||| Sbjct 27198 CAAGGAGATTTTACTTGTTGGTGTCAATTAGGTAGTCTGTGGACTTTTGTTGCTCTCT-- 27255 Query 179248 GGTGCCTTCGCCCTAATTGGATTCATGCTTCGTCAGTTTGAACTGGCACG-TCTCATCGG 179306 | ||||| || ||| | | ||| |||||||||| || || ||| || Sbjct 27256 ---------GGACTAATAGGTCTCACGTTACGTTAGTTTGAACTTGCTCGATCTGTTCAA 27306 Query 179307 TATCCGTCCTTACAATGCGATTGCTTTTACTGGTCCTATTGCCGTATTCGTTAGTGTATT 179366 | | || ||||| ||||| || || || ||| ||| ||||| | || || ||||| Sbjct 27307 T-TGCGACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTTTTTTTTTTTTGGTATT 27365 Query 179367 TCTCATCTACCCACTTGGACAATCCAGTTGGTTCTTTGCGCCATCGTTTGGTGTTGCGGC 179426 || || || | ||| || ||||| |||||||||||| ||| |||||||| || || Sbjct 27366 GCTGATTTATCTACTAGGTCAATCGGGTTGGTTCTTTGTGCCTAGCTTTGGTGTAGCAGC 27425 Query 179427 GATCTTTAGATTCCTACTTTTCTTACAAGGTTTCCACAACTGGACACTCAACCCCTTTCA 179486 || ||| |||| | || || || |||| || || || |||||| | ||||| ||||| Sbjct 27426 TATATTTC-ATTCTTTCTCTTTTTCTAAGGGTTTCATAATTGGACATTGAACCCATTTCA 27484 Query 179487 CATGATGGGAGTTGCAGGTATCCTGGGTGGTGCTCTGCTCTCTGCTATTCATGGAGTAAC 179546 |||||||| ||||| ||| | | || | ||||||||| | | ||||||||| | || Sbjct 27485 TATGATGGGGGTTGCTGGTGTAATTGGCGCTGCTCTGCTATGCGTTATTCATGGTGCTAC 27544 Query 179547 TGTAGAGAATACATTGTATGAAGATGGAGAACAAGCAAACACATTTAAAGCGTTCGACTC 179606 |||| | ||| || | ||||||||| || ||||| |||||| || || || | Sbjct 27545 CTTAGAAAGTACTTTATTTGAAGATGGTGATGGTGCAAATACATTTTGTGCTTTTAACCC 27604 Query 179607 TACGCAAGAGGAGGAGACCTATTCTATGGTTACAGCGAACCGTTTTTGGTCGCAGATCTT 179666 || |||| || || || ||||| ||||| || || |||| |||||||| || ||||| Sbjct 27605 AACTCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAACCACTTTTGGTCCCAAATCTT 27664 Query 179667 CGGGGTTCCGTTTAGCAATAAGCGTTGGTTCCACTTCTTTAAGCTGTTTGTTCCTGTCAT 179726 |||||| | ||| |||||| |||||||| || ||| ||| ||| ||||| | || | Sbjct 27665 TGGGGTTACTTTTTCCAATAAACGTTGGTTACATTTCCTTATGCTATTTGTACTAGTAAC 27724 Query 179727 GGGTCTTTGGGTCTCTTCTATTGGCATCATTGGGCTAGCTCTTAATCTTCGTGCTTATGA 179786 || | ||| | | || |||| | | || || ||||| || || ||||| ||||| Sbjct 27725 CAGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTGGCTCTGAACCTACGTGCCTATGA 27784 Query 179787 TTTTGTGAGTCAAGAGATCAGAGCAGCAGAAGATCCTGAGTTCGAGACGTTCTATACAAA 179846 ||||| ||| || ||| | |||| |||||||||||| || ||||| ||||| ||||| Sbjct 27785 CTTTGTTTCTCAGGAAATCCGTGCAGTAGAAGATCCTGAATTTGAGACTTTCTACACAAA 27844 Query 179847 GAACATTCTTCTGAATGAAGGACTACGTGCTTGGTTGGCACCTGCTGATCAACCACATGA 179906 || |||||| | |||||||| | | ||||||| ||| || ||||| || ||||| Sbjct 27845 AAATATTCTTTTAAATGAAGGTATTCATGCTTGGATGGAGGCTCAAGATCAGCCTCATGA 27904 Query 179907 AAACTT 179912 |||||| Sbjct 27905 AAACTT 27910 >seq47040 Length=8764 Score = 158 bits (174), Expect = 1e-33 Identities = 166/216 (77%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 177942 GTTGCATACTCTGCACCTGTTGCAGCAGCATCCGCAGTCTTTCTAG-TCTATCCTTTCGG 178000 |||||||| || || ||||||||||| || | | || ||||| | ||||||| | || Sbjct 5687 GTTGCATATTCAGCTCCTGTTGCAGCTGCTACTACTGT-TTTCTTGATCTATCCAATTGG 5629 Query 178001 TCAAGGTTCATTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCT 178060 |||||| || || | | || |||||| || || ||||||||||| |||| |||| | Sbjct 5628 TCAAGGAAGCTTTTCTCACGGTAAGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGAT 5569 Query 178061 TGTATTCCAAGCAGAACACAATATCCTTATGCACCCGTTCCACATGCTCGGTGTTGCTGG 178120 ||||||||| || || ||||| |||||||||||||| || || ||| | ||||| ||||| Sbjct 5568 TGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCATATGTTAGGTGTAGCTGG 5509 Query 178121 GGTATTCGGTGGATCTCTTTTCTCTGCTATGCATGG 178156 |||||||| || | || || |||||||||||| Sbjct 5508 TGTATTCGGCGGCTTCCTATTTAGTGCTATGCATGG 5473 >seq54963 Length=251348 Score = 154 bits (170), Expect = 2e-32 Identities = 163/215 (76%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 177942 GTTGCATACTCTGCACCTGTTGCAGCAGCATCCGCAGTCTTTCTAGTCTATCCTTTCGGT 178001 |||||||| || || ||||||| ||| || | || || || | ||||||| | ||| Sbjct 117193 GTTGCATATTCAGCTCCTGTTGTAGCTGCTACTGCTGTTTTATTGATCTATCCAATTGGT 117252 Query 178002 CAAGGTTCATTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTT 178061 ||||| || || || | ||||||||| || || ||||||||||| |||| |||| || Sbjct 117253 CAAGGAAGCTTTTCTGACGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATT 117312 Query 178062 GTATTCCAAGCAGAACACAATATCCTTATGCACCCGTTCCACATGCTCGGTGTTGCTGGG 178121 |||||||| || || ||||| |||||||||||||| || |||||| | |||| ||| Sbjct 117313 GTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTACGTGTAATTGGT 117372 Query 178122 GTATTCGGTGGATCTCTTTTCTCTGCTATGCATGG 178156 |||||||| || || || || || ||||||||| Sbjct 117373 GTATTCGGCGGCTCCCTATTTAGTGTTATGCATGG 117407 >seq54898 Length=422707 Score = 87.8 bits (96), Expect = 2e-12 Identities = 161/236 (68%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 138527 CTGATGATCAGTACATCCTTGATGCTGCTGATGAAGCAGGTATTGATCTTCCCTACTCCT 138586 |||||||| |||||||| ||| | ||||| ||||| |||| | || || || | Sbjct 379499 CTGATGATGCTTACATCCTAGATTCAGCTGAAACTGCAGGAGTTGAGTTGCCTTATTCAT 379558 Query 138587 GTCGTGCTGGTGCATGTTCTACCTGTGCTGGTAAATTAGTTGAAGGAACTGTAGATCAGT 138646 | | ||||| || || | |||||||||||| || || ||| | || || |||| Sbjct 379559 GCAGGGCTGGGGCTTGCTGTACCTGTGCTGGGAAGAAGGTGTCAGGCTCAGTGGACCAGT 379618 Query 138647 CTGACCAGTCTTTCCTTGATGATGACCAAATTGCAGCAGGATTTATCATGACTTGCGTAG 138706 |||| || ||||||||||| | ||||| | | ||| | | | ||||||| || Sbjct 379619 CTGATGGCTCATTCCTTGATGACAAACAAATGGAGGAAGGTTATGTGCTGACTTGTGTCT 379678 Query 138707 CATACCCCACATCCGATTGTATAATTGAAACTGAAAAAGAGGACGAACTATACTGA 138762 ||||||| || || || ||| | ||| | || | || || || || || | |||| Sbjct 379679 CATACCCGACTTCTGACTGTGTGATTCACACACACAAGGAAGAAGATCTTTTCTGA 379734 >seq1126 Length=754251 Score = 87.8 bits (96), Expect = 2e-12 Identities = 114/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 138517 TTTGACTGTGCTGATGATCAGTACATCCTTGATGCTGCTGATGAAGCAGGTATTGATCTT 138576 ||||| || | |||||| |||||||| || ||||| || | ||||||||||| Sbjct 263765 TTTGATTGCCCGGATGATGTTTACATCCTGGACCAGGCTGAGGAGGTTGGTATTGATCTC 263824 Query 138577 CCCTACTCCTGTCGTGCTGGTGCATGTTCTACCTGTGCTGGTAAATTAGTTGAAGGAACT 138636 || ||||| || | || ||| | || ||| | ||||| || ||| | || |||||| || Sbjct 263825 CCTTACTCATGCAGAGCAGGTTCTTGCTCTTCATGTGCAGGGAAAGTTGTGGAAGGATCT 263884 Query 138637 GTAGATCAGTCTGACCAGTCTTTCCTTGATGATGACCA 138674 | || |||||||| ||||||||||||||||| Sbjct 263885 CTGGACCAGTCTGATGGTAGCTTCCTTGATGATGACCA 263922 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 604866182415480