Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Juglans_20regia_20[refseq_20GCF_5F001411555.1_202015-10-22] 105,803 sequences; 699,672,627 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq1025 87.8 3e-12 >seq1025 Length=2429094 Score = 87.8 bits (96), Expect = 3e-12 Identities = 102/140 (73%), Gaps = 11/140 (8%) Strand=Plus/Minus Query 81643 CAGAGTAAATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAAC----- 81697 |||||| | |||||||||||||| ||||| | ||||| || | ||||| | | Sbjct 1182801 CAGAGTGGACTCCTTCTGTATATTGTAATCCGCCAGAGTCCTTCCATCTTCAAGCTGTTT 1182742 Query 81698 ------AAAGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGC 81751 |||||| || || || ||| ||||| ||||| |||| || || ||||||||||| Sbjct 1182741 ACCCGCAAAGATAAGCCTCTGCTGATCTGGAGGTATTCCTTCTTTGTCCTGAATCTTTGC 1182682 Query 81752 TTTTATATTTTCAATCGTAT 81771 ||| | ||| ||||| |||| Sbjct 1182681 TTTCACATTATCAATTGTAT 1182662 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 902216404810080