Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Juglans_20regia_20[refseq_20GCF_5F001411555.1_202015-10-22] 105,803 sequences; 699,672,627 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq52289 95.1 3e-14 seq19195 95.1 3e-14 >seq52289 Length=196532 Score = 95.1 bits (104), Expect = 3e-14 Identities = 152/215 (71%), Gaps = 14/215 (7%) Strand=Plus/Plus Query 304934 ATGCAGGCATCTCAAAGATCTGGCAGACCT-TTAAAGG-----GTATTAGGCAACGCATT 304987 || ||||| | || ||||| || |||||| ||||| ||| ||||| || Sbjct 48025 ATACAGGCTACCCAGAGATCAGGGAGACCTATTAAATCCATATGTAGTAGGC------TT 48078 Query 304988 AAAGGTAAAGAGGGTCGTATTCGAGGTAATCTAATGGGAAAACGTGTTGATTTTAGTGCA 305047 || | || || ||||| ||| ||||||| | |||||||||||||| |||||| |||| Sbjct 48079 AAGGCAAAGGAAGGTCGGATTAGAGGTAACTTGATGGGAAAACGTGTGGATTTTTCTGCA 48138 Query 305048 AGAAGTGTAATCACACCTGATTCTCAAATTAGTCTTCATGAATTAGGAGTTCCAATTGA- 305106 ||| ||| || || || ||| | | || | | | ||||||||||||| || | || Sbjct 48139 CGAACTGTTATTACTCCAGATCCAAACATCAATATAGATGAATTAGGAGTACC-GTGGAG 48197 Query 305107 AATTGCTTTAAAACTAACATTTCCAGAGAAAGTTA 305141 ||||| ||||| || |||| ||||||| |||| Sbjct 48198 TATTGCCTTAAATCTCACATACCCAGAGACTGTTA 48232 >seq19195 Length=1637 Score = 95.1 bits (104), Expect = 3e-14 Identities = 152/215 (71%), Gaps = 14/215 (7%) Strand=Plus/Plus Query 304934 ATGCAGGCATCTCAAAGATCTGGCAGACCT-TTAAAGG-----GTATTAGGCAACGCATT 304987 || ||||| | || ||||| || |||||| ||||| ||| ||||| || Sbjct 245 ATACAGGCTACCCAGAGATCAGGGAGACCTATTAAATCCATATGTAGTAGGC------TT 298 Query 304988 AAAGGTAAAGAGGGTCGTATTCGAGGTAATCTAATGGGAAAACGTGTTGATTTTAGTGCA 305047 || | || || ||||| ||| ||||||| | |||||||||||||| |||||| |||| Sbjct 299 AAGGCAAAGGAAGGTCGGATTAGAGGTAACTTGATGGGAAAACGTGTGGATTTTTCTGCA 358 Query 305048 AGAAGTGTAATCACACCTGATTCTCAAATTAGTCTTCATGAATTAGGAGTTCCAATTGA- 305106 ||| ||| || || || ||| | | || | | | ||||||||||||| || | || Sbjct 359 CGAACTGTTATTACTCCAGATCCAAACATCAATATAGATGAATTAGGAGTACC-GTGGAG 417 Query 305107 AATTGCTTTAAAACTAACATTTCCAGAGAAAGTTA 305141 ||||| ||||| || |||| ||||||| |||| Sbjct 418 TATTGCCTTAAATCTCACATACCCAGAGACTGTTA 452 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1185203955455683