Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Juglans_20regia_20[refseq_20GCF_5F001411555.1_202015-10-22] 105,803 sequences; 699,672,627 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq1025 98.7 7e-16 seq45900 93.3 3e-14 seq58409 89.7 3e-13 seq1868 89.7 3e-13 >seq1025 Length=2429094 Score = 98.7 bits (108), Expect = 7e-16 Identities = 168/240 (70%), Gaps = 4/240 (2%) Strand=Plus/Minus Query 33513 AAAATCGTCA--CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATG 33570 |||||| || || |||| |||||| | |||||| || | ||| || ||||| || Sbjct 1182383 AAAATCTGCATCCCTCCTCGCAAACGCAGCACCAAGTGCAAAGTCGATTCCTTTTGAATA 1182324 Query 33571 TTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGC 33630 |||||||||| | || ||| | || || || || || || ||||||||||| | |||| Sbjct 1182323 TTGTAATCGGCTAAGGTCCGTCCATCCTCTAACTGCTTGCCAGCAAAAATCAACCTCTGC 1182264 Query 33631 TGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC 33689 || ||| | || | |||||||||||| ||| || ||| |||| || | ||| || Sbjct 1182263 TGGTCTGGTGGGATACCTTCTTTGTCTTGAATCTTAGCCTTC-ACATTATCAATGGTATC 1182205 Query 33690 GCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || || || | || || ||||| || || || || || ||||| |||||||| Sbjct 1182204 GGAGCTCTCAACCTCCAAAGTAATGGTTTTTCCAGTCAAGGTCTTGACAAAAATCTGCAT 1182145 Score = 89.7 bits (98), Expect = 3e-13 Identities = 169/244 (69%), Gaps = 10/244 (4%) Strand=Plus/Minus Query 33513 AAAATCGTCA--CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATG 33570 |||||| || || || | || ||| | ||||||||| | ||| ||| || || ||| Sbjct 1182155 AAAATCTGCATTCCTCCACGCAGACGAAGCACCAAATGCAAGGTGGACTCCTTCTGAATG 1182096 Query 33571 TTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGC 33630 |||||||||| | ||| | | | || || ||||| || || ||||| ||||| | |||| Sbjct 1182095 TTGTAATCGGCTAATGTCCTTCCATCTTCTAATTGCTTCCCAGCAAAGATCAACCTCTGC 1182036 Query 33631 TGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC 33689 ||||| | || | ||| || ||||| || || || | |||| || | ||| || Sbjct 1182035 TGATCCGGTGGGATACCCTCCTTGTCTTGGATCTT-TGCCTTGACATTATCTATGGTATC 1181977 Query 33690 ---GCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTG 33746 ||| ||| || || | || || ||||| || || || || || |||||||| || Sbjct 1181976 CGAGCT---TTCAACTTCCAAGGTTATAGTTTTTCCCGTCAAGGTCTTCACAAAGATTTG 1181920 Query 33747 CATA 33750 |||| Sbjct 1181919 CATA 1181916 Score = 84.2 bits (92), Expect = 1e-11 Identities = 160/232 (69%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| | |||||| || || ||| || ||||| ||||| || || | Sbjct 1181688 ACCACCACGGAGACGAAGCACCAAGTGAAGGGTGGATTCCTTTTGGATGTTATAGTCAGC 1181629 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | ||||| | || || | ||| || || || || || | | ||||| ||| | || Sbjct 1181628 CAAAGTGCGACCATCTTCAAGTTGCTTACCAGCGAAGATGAGCCTTTGCTGGTCTGGTGG 1181569 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTC---GCTTGATT 33697 | ||| |||||||| |||||| ||| | ||| |||| |||||| |||| | Sbjct 1181568 GATACCCTCTTTGTCCTGAATTTTGGCTTTTA-CATTGTCAATGGTGTCAGAGCTT---T 1181513 Query 33698 CCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| |||| ||||| || || || || | || || |||||||||||||| Sbjct 1181512 CCACCTCAAGGGTGATTGTCTTTCCAGTGAGAGTCTTGACAAAGATCTGCAT 1181461 >seq45900 Length=1264 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | | ||| | || | ||| || ||| ||| || || || ||||| |||| Sbjct 523 CCACCACGGAGACGGAGGACGAGATGGAGCGTGGACTCCTTCTGAATATTGTAGTCGGCA 464 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| |||| ||||| || || ||||| || ||||||||||||||||| | || Sbjct 463 AGGGTGCGACCGTCCTCCAACTGCTTCCCGGCGAAGATCAAACGCTGCTGATCCGGAGGA 404 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | |||||| ||||| || || | | ||| | ||| | ||||||| || || Sbjct 403 ATACCTTCCTTGTCCTGGATCTT-GGCCTTAACGTTGTCAATGGTGTCGGAGCTCTCGAC 345 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || || || || | ||||| || ||||||||||| Sbjct 344 CTCGAGAGTGATGGTCTTGCCGGTGAGGGTTTTGACGAAGATCTGCAT 297 Score = 89.7 bits (98), Expect = 3e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | | ||| | || | ||| || ||| ||| || || || ||||| |||| Sbjct 751 CCACCACGGAGACGGAGGACGAGATGGAGCGTGGACTCCTTCTGGATATTGTAGTCGGCA 692 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| |||| ||||| || || ||||| || ||||||||||||||||| | || Sbjct 691 AGGGTGCGACCGTCCTCCAACTGCTTCCCGGCGAAGATCAAACGCTGCTGATCCGGAGGG 632 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | |||||| ||||| || || | | ||| | || | ||||||| || || Sbjct 631 ATACCTTCCTTGTCCTGGATCTT-GGCCTTAACGTTATCGATGGTGTCGGAACTCTCGAC 573 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || || || || | ||||| || ||||||||||| Sbjct 572 CTCGAGGGTGATGGTCTTCCCGGTGAGGGTTTTGACGAAGATCTGCAT 525 Score = 89.7 bits (98), Expect = 3e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | | ||| | || | ||| || ||| ||| || || || ||||| |||| Sbjct 979 CCACCACGGAGACGGAGGACGAGATGGAGCGTGGACTCCTTCTGGATATTGTAGTCGGCA 920 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| |||| ||||| || || ||||| || ||||||||||||||||| | || Sbjct 919 AGGGTGCGACCGTCCTCCAACTGCTTCCCGGCGAAGATCAAACGCTGCTGATCCGGAGGG 860 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | |||||| ||||| || || | | ||| | || | ||||||| || || Sbjct 859 ATACCTTCCTTGTCCTGGATCTT-GGCCTTAACGTTATCGATGGTGTCGGAACTCTCGAC 801 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || || || || | ||||| || ||||||||||| Sbjct 800 CTCGAGGGTGATGGTCTTCCCGGTGAGGGTTTTGACGAAGATCTGCAT 753 Score = 89.7 bits (98), Expect = 3e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | | ||| | || | ||| || ||| ||| || || || ||||| |||| Sbjct 1207 CCACCACGGAGACGGAGGACGAGATGGAGCGTGGACTCCTTCTGGATATTGTAGTCGGCA 1148 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| |||| ||||| || || ||||| || ||||||||||||||||| | || Sbjct 1147 AGGGTGCGACCGTCCTCCAACTGCTTCCCGGCGAAGATCAAACGCTGCTGATCCGGAGGG 1088 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | |||||| ||||| || || | | ||| | || | ||||||| || || Sbjct 1087 ATACCTTCCTTGTCCTGGATCTT-GGCCTTAACGTTATCGATGGTGTCGGAACTCTCGAC 1029 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || || || || | ||||| || ||||||||||| Sbjct 1028 CTCGAGGGTGATGGTCTTCCCGGTGAGGGTTTTGACGAAGATCTGCAT 981 >seq58409 Length=227 Score = 89.7 bits (98), Expect = 3e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | | ||| | || | ||| || ||| ||| || || || ||||| |||| | Sbjct 64 CCACCACGGAGACGGAGGACGAGATGAAGCGTGGACTCCTTCTGGATATTGTAGTCGGCG 123 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| |||| ||||| || || ||||| || ||||||||||||||||| | || Sbjct 124 AGGGTGCGACCGTCCTCCAACTGCTTCCCGGCGAAGATCAAACGCTGCTGATCCGGAGGG 183 Query 33643 ACACCTTCTTTGTC 33656 | |||||| ||||| Sbjct 184 ATACCTTCCTTGTC 197 >seq1868 Length=298818 Score = 89.7 bits (98), Expect = 3e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | | ||| | || | ||| || ||| ||| || || || ||||| |||| Sbjct 223469 CCACCACGGAGACGGAGGACGAGATGGAGCGTGGACTCCTTCTGGATATTGTAGTCGGCA 223410 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| |||| ||||| || || ||||| || ||||||||||||||||| | || Sbjct 223409 AGGGTGCGACCGTCCTCCAACTGCTTCCCGGCGAAGATCAAACGCTGCTGATCCGGAGGG 223350 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | |||||| ||||| || || | | ||| | || | ||||||| || || Sbjct 223349 ATACCTTCCTTGTCCTGGATCTT-GGCCTTAACGTTATCGATGGTGTCGGAACTCTCGAC 223291 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || || || || | ||||| || ||||||||||| Sbjct 223290 CTCGAGGGTGATGGTCTTCCCGGTGAGGGTTTTGACGAAGATCTGCAT 223243 Score = 89.7 bits (98), Expect = 3e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | | ||| | || | ||| || ||| ||| || || || ||||| |||| Sbjct 223697 CCACCACGGAGACGGAGGACGAGATGGAGCGTGGACTCCTTCTGGATATTGTAGTCGGCA 223638 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| |||| ||||| || || ||||| || ||||||||||||||||| | || Sbjct 223637 AGGGTGCGACCGTCCTCCAACTGCTTCCCGGCGAAGATCAAACGCTGCTGATCCGGAGGG 223578 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | |||||| ||||| || || | | ||| | || | ||||||| || || Sbjct 223577 ATACCTTCCTTGTCCTGGATCTT-GGCCTTAACGTTATCGATGGTGTCGGAACTCTCGAC 223519 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || || || || | ||||| || ||||||||||| Sbjct 223518 CTCGAGGGTGATGGTCTTCCCGGTGAGGGTTTTGACGAAGATCTGCAT 223471 Score = 89.7 bits (98), Expect = 3e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | | ||| | || | ||| || ||| ||| || || || ||||| |||| | Sbjct 223925 CCACCACGGAGACGGAGGACGAGATGAAGCGTGGACTCCTTCTGGATATTGTAGTCGGCG 223866 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| |||| ||||| || || || || || ||||||||||||||||| | || Sbjct 223865 AGGGTGCGACCGTCCTCCAACTGCTTCCCAGCGAAGATCAAACGCTGCTGATCGGGAGGG 223806 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | |||||| ||||| || || | | || | ||| | ||||||| || || Sbjct 223805 ATACCTTCCTTGTCCTGGATCTT-GGCCTTGACGTTGTCTATGGTGTCGGAACTCTCGAC 223747 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || || || || | ||||| || ||||||||||| Sbjct 223746 CTCGAGGGTGATGGTCTTCCCGGTGAGGGTTTTGACGAAGATCTGCAT 223699 Score = 89.7 bits (98), Expect = 3e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | | ||||| || | ||| || ||| ||| || || ||||| || |||| Sbjct 224153 CCACCGCGGAGACGTAGGACGAGATGGAGGGTGGACTCCTTCTGAATGTTATAGTCGGCA 224094 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||||||| || ||||| || |||| |||||||||||| | || Sbjct 224093 AGGGTGCGACCATCCTCCAATTGCTTGCCGGCGAAGATCAGACGCTGCTGATCGGGAGGG 224034 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | |||||| ||||| || || | | || | ||| | ||||||| || || Sbjct 224033 ATACCTTCCTTGTCCTGGATCTT-GGCCTTGACGTTGTCGATGGTGTCGGAACTCTCGAC 223975 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || || || || | ||||| || ||||||||||| Sbjct 223974 CTCGAGGGTGATGGTCTTCCCGGTGAGGGTTTTGACGAAGATCTGCAT 223927 Score = 87.8 bits (96), Expect = 1e-12 Identities = 139/194 (72%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 33558 CTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAA 33617 ||| ||||| ||||||||||| | || || || | || |||||||| || |||||||| Sbjct 224574 CTCCTTTTGAATGTTGTAATCAGCTAGGGTACGCCCATCCTCCAATTGCTTCCCGGCAAA 224515 Query 33618 AATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACAT 33677 || | | ||||| || | || | ||||| ||||| ||| || ||| || | Sbjct 224514 GATGAGCCTTTGCTGGTCCGGAGGAATGCCTTCCTTGTCCTGAATCTTAGCCTTC-ACGT 224456 Query 33678 AGTC-ACGGTGTCGCTTGAT-TCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTT 33735 ||| | |||||| | | | ||||| || | ||||| ||||| ||||| || || || Sbjct 224455 TGTCGATGGTGTC-CGAGCTCTCCACCTCCAGAGTGATGGTTTTTCCTGTCAAGGTCTTA 224397 Query 33736 ACAAAGATCTGCAT 33749 |||||||||||||| Sbjct 224396 ACAAAGATCTGCAT 224383 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328280144717760