Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Juglans_20regia_20[refseq_20GCF_5F001411555.1_202015-10-22] 105,803 sequences; 699,672,627 total letters Query= NC_025456.1 Length=46547 Score E Sequences producing significant alignments: (Bits) Value seq47040 158 4e-34 seq54963 154 4e-33 seq2016 114 4e-21 >seq47040 Length=8764 Score = 158 bits (174), Expect = 4e-34 Identities = 168/219 (77%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 19889 GTTGCCTACTCTGCTCCGGTTGCAGCCGCCTCTGCGGTCTTTCTCG-TCTACCCGTTTGG 19947 ||||| || || ||||| |||||||| || || | || ||||| | |||| || |||| Sbjct 5687 GTTGCATATTCAGCTCCTGTTGCAGCTGCTACTACTGT-TTTCTTGATCTATCCAATTGG 5629 Query 19948 TCAGGGTAGCTTCTCCGATGCTATGCCTTTGGGTATCTCGGGTACGTTCAACTACATGTT 20007 ||| || ||||| || | | || |||| | || || || ||||| ||||||| |||| | Sbjct 5628 TCAAGGAAGCTTTTCTCACGGTAAGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGAT 5569 Query 20008 GGTATTCCAAGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTTGGTGTGGCTGG 20067 |||||||| || || || ||||| || |||||||| || || ||| | ||||| ||||| Sbjct 5568 TGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCATATGTTAGGTGTAGCTGG 5509 Query 20068 TGTATTCGGTGGGTCACTATTCAGTGCGATGCACGGTTC 20106 ||||||||| || | ||||| ||||| ||||| ||||| Sbjct 5508 TGTATTCGGCGGCTTCCTATTTAGTGCTATGCATGGTTC 5470 >seq54963 Length=251348 Score = 154 bits (170), Expect = 4e-33 Identities = 165/218 (76%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 19889 GTTGCCTACTCTGCTCCGGTTGCAGCCGCCTCTGCGGTCTTTCTCGTCTACCCGTTTGGT 19948 ||||| || || ||||| |||| ||| || |||| || || | |||| || ||||| Sbjct 117193 GTTGCATATTCAGCTCCTGTTGTAGCTGCTACTGCTGTTTTATTGATCTATCCAATTGGT 117252 Query 19949 CAGGGTAGCTTCTCCGATGCTATGCCTTTGGGTATCTCGGGTACGTTCAACTACATGTTG 20008 || || ||||| || || | ||||||| | || || || ||||| ||||||| |||| | Sbjct 117253 CAAGGAAGCTTTTCTGACGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATT 117312 Query 20009 GTATTCCAAGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTTGGTGTGGCTGGT 20068 |||||||| || || || ||||| || |||||||| || |||||| | |||| |||| Sbjct 117313 GTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTACGTGTAATTGGT 117372 Query 20069 GTATTCGGTGGGTCACTATTCAGTGCGATGCACGGTTC 20106 |||||||| || || ||||| |||| ||||| ||||| Sbjct 117373 GTATTCGGCGGCTCCCTATTTAGTGTTATGCATGGTTC 117410 >seq2016 Length=232386 Score = 114 bits (126), Expect = 4e-21 Identities = 115/148 (78%), Gaps = 1/148 (1%) Strand=Plus/Plus Query 19945 TGGTCAGGGTAGCTTCTCCGATGCTATGCCTTTGGGTATCTCGGGTACGTTCAACTACAT 20004 |||||| || ||||| || |||| ||||||| || | ||| |||| ||||| | ||| Sbjct 155472 TGGTCAAGGAAGCTTTTCTGATGGTATGCCTCCAGGAAGTTCGCGTACTTTCAAGTTCAT 155531 Query 20005 GTTGGTATTCCAAGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTTGGTGTGGC 20064 | | |||||||| || || || ||||| || ||||||| || |||||| | ||||| || Sbjct 155532 GATTGTATTCCAGGCTGAGCAGAACAT-CTTTTGCACCCATTTCACATGTTAGGTGTAGC 155590 Query 20065 TGGTGTATTCGGTGGGTCACTATTCAGT 20092 |||||||||| |||| || || |||||| Sbjct 155591 TGGTGTATTCAGTGGCTCCCTCTTCAGT 155618 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148641809914374