Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Juglans_20regia_20[refseq_20GCF_5F001411555.1_202015-10-22] 105,803 sequences; 699,672,627 total letters Query= NC_025464.1 Length=44147 Score E Sequences producing significant alignments: (Bits) Value seq47040 190 6e-44 seq54963 187 7e-43 seq2016 93.3 1e-14 >seq47040 Length=8764 Score = 190 bits (210), Expect = 6e-44 Identities = 173/218 (79%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 19108 GTTGCCTACTCAGCTCCTGTTGCCGCAGCCTCTGCGGTCTTCCTTGTCTATCCATTTGGT 19167 ||||| || |||||||||||||| || || || | || ||| | |||||||| ||||| Sbjct 5687 GTTGCATATTCAGCTCCTGTTGCAGCTGCTACTACTGTTTTCTTGATCTATCCAATTGGT 5628 Query 19168 CAAGGTTCCTTTAGCGACGCTATGCCTTTGGGTATTAGTGGTACGTTCAACTACATGCTT 19227 ||||| |||| ||| || |||| | || ||| |||||| ||||||| |||| || Sbjct 5627 CAAGGAAGCTTTTCTCACGGTAAGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATT 5568 Query 19228 GTATTCCAGGCTGAACATAACATCCTCATGCACCCGTTCCACATGCTCGGTGTCGCTGGT 19287 |||||||||||||| || |||||||| |||||||| || || ||| | ||||| |||||| Sbjct 5567 GTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCATATGTTAGGTGTAGCTGGT 5508 Query 19288 GTGTTCGGCGGGTCACTATTTAGTGCGATGCACGGTTC 19325 || |||||||| | ||||||||||| ||||| ||||| Sbjct 5507 GTATTCGGCGGCTTCCTATTTAGTGCTATGCATGGTTC 5470 >seq54963 Length=251348 Score = 187 bits (206), Expect = 7e-43 Identities = 172/218 (79%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 19108 GTTGCCTACTCAGCTCCTGTTGCCGCAGCCTCTGCGGTCTTCCTTGTCTATCCATTTGGT 19167 ||||| || ||||||||||||| || || |||| || || | |||||||| ||||| Sbjct 117193 GTTGCATATTCAGCTCCTGTTGTAGCTGCTACTGCTGTTTTATTGATCTATCCAATTGGT 117252 Query 19168 CAAGGTTCCTTTAGCGACGCTATGCCTTTGGGTATTAGTGGTACGTTCAACTACATGCTT 19227 ||||| |||| |||| ||||||| | || ||| |||||| ||||||| |||| || Sbjct 117253 CAAGGAAGCTTTTCTGACGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATT 117312 Query 19228 GTATTCCAGGCTGAACATAACATCCTCATGCACCCGTTCCACATGCTCGGTGTCGCTGGT 19287 |||||||||||||| || |||||||| |||||||| || |||||| | |||| |||| Sbjct 117313 GTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTACGTGTAATTGGT 117372 Query 19288 GTGTTCGGCGGGTCACTATTTAGTGCGATGCACGGTTC 19325 || |||||||| || |||||||||| ||||| ||||| Sbjct 117373 GTATTCGGCGGCTCCCTATTTAGTGTTATGCATGGTTC 117410 >seq2016 Length=232386 Score = 93.3 bits (102), Expect = 1e-14 Identities = 110/148 (74%), Gaps = 1/148 (1%) Strand=Plus/Plus Query 19164 TGGTCAAGGTTCCTTTAGCGACGCTATGCCTTTGGGTATTAGTGGTACGTTCAACTACAT 19223 ||||||||| |||| || | ||||||| || | | |||| ||||| | ||| Sbjct 155472 TGGTCAAGGAAGCTTTTCTGATGGTATGCCTCCAGGAAGTTCGCGTACTTTCAAGTTCAT 155531 Query 19224 GCTTGTATTCCAGGCTGAACATAACATCCTCATGCACCCGTTCCACATGCTCGGTGTCGC 19283 | |||||||||||||||| || ||||| || ||||||| || |||||| | ||||| || Sbjct 155532 GATTGTATTCCAGGCTGAGCAGAACAT-CTTTTGCACCCATTTCACATGTTAGGTGTAGC 155590 Query 19284 TGGTGTGTTCGGCGGGTCACTATTTAGT 19311 |||||| ||| | || || || || ||| Sbjct 155591 TGGTGTATTCAGTGGCTCCCTCTTCAGT 155618 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 140971459147974