Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Juglans_20regia_20[refseq_20GCF_5F001411555.1_202015-10-22] 105,803 sequences; 699,672,627 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq1014 86.0 6e-12 seq1025 84.2 2e-11 >seq1014 Length=2264649 Score = 86.0 bits (94), Expect = 6e-12 Identities = 152/222 (68%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||||||||| |||| ||||| | | || || || ||||| ||||| || | || Sbjct 109728 ACGCAAGCGCAGCACCAGATGTAGGGTAGATTCCTTCTGAATATTGTAATCTGCAAGAGT 109669 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 | | |||||| ||||| || || | | |||| || | || || |||||||| ||||| Sbjct 109668 CCTCCCATCTTCTAGCTGCTTGCCTGCAAAGATAAGCCTTTGCTGGTCTGGAGGGATGCC 109609 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 ||||| || || ||| || | | || | ||||| | || || |||| Sbjct 109608 CTCTTTGTCCTGTATCTTTGCCTTGACATTGTCGATTGTATCCGAACTTTCAACCTCGAG 109549 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | ||||||||||||| ||| || | ||||||||||| Sbjct 109548 AGTTATGGTTTTACCAGTCAAAGTCTTCACAAAAATCTGCAT 109507 >seq1025 Length=2429094 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || || || ||||| || || || | |||||| ||||||||||| | | Sbjct 1182794 GACTCCTTCTGTATATTGTAATCCGCCAGAGTCCTTCCATCTTCAAGCTGTTTACCCGCA 1182735 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || | ||| |||||||||||||| |||||||| || ||| ||| ||||| Sbjct 1182734 AAGATAAGCCTCTGCTGATCTGGAGGTATTCCTTCTTTGTCCTGAATCTTTGCTTTCACA 1182675 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | ||||| | ||| || || | || | || || ||||||| ||||| Sbjct 1182674 TTATCAATTGTATCAGAACTCTCGACCTCCAAGGTAATGGTCTTCCCAGTCAATGTTTTC 1182615 Query 132110 ATGAAAATCTGCAT 132123 | || |||||||| Sbjct 1182614 ACAAAGATCTGCAT 1182601 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475980863815080