Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Juglans_20regia_20[refseq_20GCF_5F001411555.1_202015-10-22] 105,803 sequences; 699,672,627 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq1025 96.9 3e-15 seq1014 86.0 6e-12 >seq1025 Length=2429094 Score = 96.9 bits (106), Expect = 3e-15 Identities = 154/221 (70%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 25164 AATTAAACAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAG 25223 ||||||| | ||||| | ||||| || || | || ||||| | ||||| | || | Sbjct 1181450 AATTAAAACAGATGCAGATCTTTGTCAAGACTCTCACTGGAAAGACAATCACCCTTGAGG 1181509 Query 25224 TCGAAGCCAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATAC 25283 | ||| | || || || || | |||||| |||||| || ||||||||||| | Sbjct 1181510 TGGAAAGCTCTGACACCATTGACAATGTAAAAGCCAAAATTCAGGACAAAGAGGGTATCC 1181569 Query 25284 CGCCCGATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCA 25343 | || || |||||||| ||||| | || || || ||||| ||||||| | | | | | Sbjct 1181570 CACCAGACCAGCAAAGGCTCATCTTCGCTGGTAAGCAACTTGAAGATGGTCGCACTTTGG 1181629 Query 25344 GCGATTACAATATTCAAAAAGAATCCACCATTCATTTAGTG 25384 || || || || ||||| ||||||||| |||| || ||| Sbjct 1181630 CTGACTATAACATCCAAAAGGAATCCACCCTTCACTTGGTG 1181670 >seq1014 Length=2264649 Score = 86.0 bits (94), Expect = 6e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | ||||| || || |||||||||| | ||||| | || || ||| | Sbjct 108595 ATGCAGATATTTGTTAAGACTCTAACCGGAAAGACAATCACCCTTGAGGTGGAAAGCTCG 108654 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || ||||| || | |||||| ||||| || || ||||| || || || || ||| Sbjct 108655 GACACTATTGACAATGTAAAAGCCAAAATCCAGGACAAGGAGGGCATTCCACCGGACCAG 108714 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 || || ||||| | | || || || |||||||||| | | | | | || || || Sbjct 108715 CAGAGGCTCATCTTTGCTGGTAAGCAGCTCGAAGATGGTCGCACTTTGGCTGACTATAAC 108774 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTG 25384 || ||||||||||||||| |||| || ||| Sbjct 108775 ATCCAAAAAGAATCCACCCTTCACTTGGTG 108804 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 444505745964960