Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Juglans_20regia_20[refseq_20GCF_5F001411555.1_202015-10-22] 105,803 sequences; 699,672,627 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq54992 282 6e-70 seq50617 233 3e-55 seq4953 127 3e-23 seq1147 95.1 2e-13 seq55670 87.8 3e-11 >seq54992 Length=480207 Score = 282 bits (312), Expect = 6e-70 Identities = 409/564 (73%), Gaps = 14/564 (2%) Strand=Plus/Minus Query 1455716 GAGCCGCTGCT-GCGCGATAACCCGAACCGCTT-TGTCCTGTTCCCCATCCGCTACCAGC 1455773 |||||| |||| || | ||||||| |||| || ||| ||||||| |||| |||| | Sbjct 460695 GAGCCGTTGCTTGCTCC-TAACCCGGACCGTTTCTGTA-TGTTCCCGATCCAGTACCCGG 460638 Query 1455774 GGATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGAC 1455833 ||||||||||||||| | |||| | |||||||| || ||||||||||||||||| ||| Sbjct 460637 AAATATGGGAAATGTACAAGAAAG-CTGAGGCCTCATTCTGGACCGCCGAGGAGGTTGAC 460579 Query 1455834 CTCGGCGCCGACACGGTC-CACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAA 1455892 ||| || ||| | || || |||| || || ||||||| || ||||| Sbjct 460578 CTCTCCGAGGAC-CTTTCTCATTGGGAATCCCTTTCTCCCGACGAGAAACACTTCATTTC 460520 Query 1455893 GCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCC 1455952 ||| |||| ||||| ||| |||||| || |||||||| ||||| || || ||| Sbjct 460519 CCACATCCTTGCCTTCTTT-GCCGCCTCTGACGGCATCGTTTTGGAGAATCTCGCTGGCA 460461 Query 1455953 GCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCA 1456012 | || ||||| |||||||| | | ||||| || || ||||| ||||||||||||| Sbjct 460460 GGTTCATGAAGGAGGTCCAGGTCGCCGAGGCCCGCGCCTTCTACGGCTTCCAGATCGCCA 460401 Query 1456013 TCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGG 1456072 |||| || || ||||| || | ||| || || |||| |||||| |||||||| | | Sbjct 460400 TCGAGAATATTCACTCCGAGATGTACAGTCTTTTGCTCGAGACCTACATCAAGGACTCCG 460341 Query 1456073 TCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCG 1456132 | ||||| ||| |||||| | ||||||||| || || || | || || ||||| Sbjct 460340 CCCAGAAGCACCGCCTCTTCCACGCCATCGAGACCGTCCCTTGCGTCGCTAAGAAGGCAC 460281 Query 1456133 ACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGTCGG 1456192 | ||||| || |||||| || ||||| | | ||| || ||||| |||||| Sbjct 460280 AGTGGGCCCTGCGCTGGATCGAC----GGGGCCGAGTC-CTTCGCTGAGCGCATCGTCGC 460226 Query 1456193 CTTTGC-CGCGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAA 1456251 || || | || || || ||||| ||||| || || |||||||||||||| ||| | || Sbjct 460225 TTTCGCGTGTGTAGAAGGTATCTTCTTCTCCGGAAGCTTCTGCGCCATCTTCTGGTTGAA 460166 Query 1456252 GAAGCGCGGCCTCATGCCCGGTCT 1456275 |||||||||| | ||||||||||| Sbjct 460165 GAAGCGCGGCTTGATGCCCGGTCT 460142 >seq50617 Length=115889 Score = 233 bits (258), Expect = 3e-55 Identities = 383/544 (70%), Gaps = 10/544 (2%) Strand=Plus/Plus Query 1455734 AACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTACCAA 1455793 || ||| |||| || | |||| || |||| |||| |||||||| |||||| | Sbjct 91838 AATCCGGACCGTTTCTGCATGTTTCCGATCCAGTACCCCGAAATATGGGAGATGTACAAG 91897 Query 1455794 AAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGGCGCCGACACGGTCCA 1455853 |||| |||||||||| || ||||| ||||||||||| |||||| ||| ||| Sbjct 91898 AAAG-CCGAGGCCTCTTTCTGGACTGCCGAGGAGGTTGACCTCTCTCAGGACCTCCGCCA 91956 Query 1455854 CTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCG 1455913 |||| | || | | ||||||| || || || |||||||| || || ||| | Sbjct 91957 ATGGGAAGCCCTCACCCCCGACGAGAAACACTTTATTTCCCACGTCCTAGCTTTCTTT-G 92015 Query 1455914 CCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCA-A 1455972 | || ||||||||||| |||||||| || || | || ||||| |||||||| Sbjct 92016 CAGCTTCAGATGGCATCGTTTTGGAGAACCTCGCTGGGAGGTTCATGAAGGAGGTCCAGG 92075 Query 1455973 TTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAA 1456032 ||||| ||||| || || ||||| |||||||| ||||||||||| || ||||| || Sbjct 92076 TTGCC-GAGGCCCGCGCCTTCTACGGCTTCCAGATTGCCATCGAAAATATTCACTCCGAG 92134 Query 1456033 ACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTT 1456092 | || || || | || |||||| ||||||| | | |||||| ||| |||||| Sbjct 92135 ATGTATAGTCTGTTGCTGGAGACCTACATCAAGGATTCAGATGAGAAGCACCGCCTCTTC 92194 Query 1456093 CGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATC 1456152 | |||||||| || || || | ||| || |||||| | ||||| || |||||| Sbjct 92195 CATGCCATCGAGACCGTCCCCTGTGTGGCTAAGAAGGCCCAGTGGGCCCTGCGCTGGATC 92254 Query 1456153 AACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGTCGGCTTTGC-CGCGTCGAGGGCA 1456211 || | || || |||||| ||||| ||| ||| ||| || ||||||| || | Sbjct 92255 GAC-GGCTCGGAGTC----CTTTGCGGAGCGTCTCATCGCCTTCGCGTGCGTCGAAGGGA 92309 Query 1456212 TCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCG 1456271 |||| ||||| || || ||||||||||| || ||| | || |||||||| | ||||| | Sbjct 92310 TCTTCTTCTCCGGAAGCTTCTGCGCCATATTCTGGTTGAAAAAGCGCGGGTTGATGCCTG 92369 Query 1456272 GTCT 1456275 |||| Sbjct 92370 GTCT 92373 >seq4953 Length=3437 Score = 127 bits (140), Expect = 3e-23 Identities = 190/259 (73%), Gaps = 8/259 (3%) Strand=Plus/Minus Query 1455716 GAGCCGCTGCT-GCGCGATAACCCGAACCGCTT-TGTCCTGTTCCCCATCCGCTACCAGC 1455773 |||||| |||| || | ||||||| |||| || ||| ||||||| |||| |||| | Sbjct 269 GAGCCGTTGCTTGCTCC-TAACCCGGACCGTTTCTGTA-TGTTCCCGATCCAGTACCCGG 212 Query 1455774 GGATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGAC 1455833 ||||||||||||||| | |||| | |||||||| || ||||||||||||||||| ||| Sbjct 211 AAATATGGGAAATGTACAAGAAAG-CTGAGGCCTCATTCTGGACCGCCGAGGAGGTTGAC 153 Query 1455834 CTCGGCGCCGACACGGTC-CACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAA 1455892 ||| || ||| | || || |||| || || ||||||| || ||||| Sbjct 152 CTCTCCGAGGAC-CTTTCTCATTGGGAATCCCTTTCTCCCGACGAGAAACACTTCATTTC 94 Query 1455893 GCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCC 1455952 ||| |||| ||||| ||| |||||| || |||||||| ||||| || || ||| Sbjct 93 CCACATCCTTGCCTTCTTT-GCCGCCTCTGACGGCATCGTTTTGGAGAATCTCGCTGGCA 35 Query 1455953 GCTTTATGAAAGAGGTCCA 1455971 | || ||||| |||||||| Sbjct 34 GGTTCATGAAGGAGGTCCA 16 >seq1147 Length=783269 Score = 95.1 bits (104), Expect = 2e-13 Identities = 160/227 (70%), Gaps = 6/227 (3%) Strand=Plus/Plus Query 724916 CAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATGTC 724975 |||||||||||||||||| || ||| || | ||||| ||| || | |||| | ||| Sbjct 112772 CAAGGTGCTCAAGCAGGTCCATCCC-GA--CATTGGG--ATC-TCAAGCAAGGCTATGGG 112825 Query 724976 GATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGCCT 725035 |||||||||| || | |||||||| |||| ||| | ||||| || || Sbjct 112826 GATCATGAACAGTTTCATTAACGACATCTTCGAGAAGCTCGCCCAGGAGGCTTCGCGGCT 112885 Query 725036 GGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGCCT 725095 ||| | | ||||||| |||||| | | || |||||||||||||| |||||||| Sbjct 112886 GGCCAGATACAACAAGAAGCCTACGATCACCTCCCGGGAGATCCAGACCGCAGTGCGCCT 112945 Query 725096 GATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 | ||| || || |||| | |||||||||||| || || |||| Sbjct 112946 CGTGCTGCCTGGTGAGTTGGCTAAGCACGCCGTCTCTGAAGGGACCA 112992 >seq55670 Length=972380 Score = 87.8 bits (96), Expect = 3e-11 Identities = 159/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||| ||||||| | |||||||| ||||| | ||||| ||| |||| |||| || Sbjct 226990 ATCTTCAAGGTGTTGAAGCAGGTCCACCCTGATA---TTGGG--ATC-TCCAGCAAGGCC 227043 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| |||||||||| || |||||||||| |||| ||| ||||| Sbjct 227044 ATGGGGATCATGAACAGCTTCATCAACGACATCTTCGAGAAGCTCGCTCAGGAGGCTTCA 227103 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || || ||| | | ||||||| || ||| | | || || ||||||||||| ||| Sbjct 227104 CGGCTCGCGAGGTACAACAAGAAGCCTACCATCACCTCCCGGGAAATCCAGACCGCTGTG 227163 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 ||||| | ||| || || |||| | ||||||||| |||||||| || Sbjct 227164 CGCCTCGTGTTGCCTGGTGAGTTGGCTAAGCACGCCGTTTCCGAGGGGAC 227213 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7167606306184086