Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Juglans_20regia_20[refseq_20GCF_5F001411555.1_202015-10-22] 105,803 sequences; 699,672,627 total letters Query= NC_026923.1 Length=179110 Score E Sequences producing significant alignments: (Bits) Value seq1861 432 4e-116 seq47040 163 3e-35 seq54963 149 7e-31 >seq1861 Length=68153 Score = 432 bits (478), Expect = 4e-116 Identities = 690/981 (70%), Gaps = 22/981 (2%) Strand=Plus/Plus Query 159379 TTTGATGTCCTGGATGACTGGCTTAAACGAGATCGCTTTGTCTTTGTGGGTTGGTCTGGA 159438 |||||| | ||||||||||| | | || | || || ||||| |||||||| || Sbjct 26949 TTTGATATTATGGATGACTGGTTACGGAGGGACCATTTCGTTTTTGTAGGTTGGTCCGGT 27008 Query 159439 CTCCTACTTCTTCCCACTGCTTATATGGCCATTGGCGGTTGGCTTACTGGCACGACTTTT 159498 || |||| |||| ||| ||| | ||| | || |||||| |||| || || || ||| Sbjct 27009 CTATTACTCTTTCCTTGTGCCTATTTTGCCTTAGGGGGTTGGTTTACAGGTACAACCTTT 27068 Query 159499 ATCACGAGTTGGTACACCCACGGTCTTGCTAGTTCCTACCTTGAAGG-TGCTAATTTTCT 159557 | || | ||| || ||||| | || |||||||| | ||||| ||| | || | | Sbjct 27069 GTAACTTCATAGTATACACACGGATTGGCGAGTTCCTATTTGGAAGGCTGCAACTTCT-T 27127 Query 159558 CACGGCAGCTGTCTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGG 159617 || || || || || || | ||| || | | | || ||| | | |||| ||||| Sbjct 27128 AACCGCTGCAGTTTCTACTCTCGCTAATAGTTTAGCACACTCTTTGTTGTTACTATGGGG 27187 Query 159618 TCCTGAGTCTCAAGGCGACTTCCAACGCTGGTGCCAACTTGGAGGGATTTGGTCCTTTGT 159677 ||| || | ||||| || || | ||||| ||| | || | | ||| | ||||| Sbjct 27188 TCCAGAAACACAAGGAGATTTTACTTGTTGGTGTCAATTAGGTAGTCTGTGGACTTTTGT 27247 Query 159678 TGCTCTCCACGGTGCATTCGCTCTCATAGGTTTTATGCTACGGCAATTTGAAATTGCTCG 159737 ||||||| || | || |||||| | | | |||| | |||||| ||||||| Sbjct 27248 TGCTCTC-----TGGA------CTAATAGGTCTCACGTTACGTTAGTTTGAACTTGCTCG 27296 Query 159738 -TCTAGTTGGTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTG 159796 ||| ||| | || ||||| ||||| || || ||||||| ||| |||||| ||||| Sbjct 27297 ATCT-GTTCAATTGCGACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTTTTTTTT 27355 Query 159797 TCAGCGTATTCCTTATCTATCCACTGGGTCAGTCTTCATGGTTCTTTGCACCTAGTTTCG 159856 | ||||| || || |||| ||| ||||| || |||||||||| ||||| || | Sbjct 27356 TTTTGGTATTGCTGATTTATCTACTAGGTCAATCGGGTTGGTTCTTTGTGCCTAGCTTTG 27415 Query 159857 GGGTAGCAGCAATCTTTAGATTC---CTGTTGTTCCTTCAGGGTTTCCACAACTGGACCC 159913 | |||||||| || ||| |||| || || ||| | |||||||| | || ||||| Sbjct 27416 GTGTAGCAGCTATATTTC-ATTCTTTCTCTTTTTC--TAAGGGTTTC-ATAATTGGACAT 27471 Query 159914 TCAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCACTGTTGTGTGCAA 159973 | ||||| || ||||||||||| ||||||||| || | || | || ||| | || | | Sbjct 27472 TGAACCCATTTCATATGATGGGGGTTGCTGGTGTAATTGGCGCTGCTCTGCTATGCGTTA 27531 Query 159974 TCCATGGTGCTACTGTAGAGAACACATTGTTTGAAGATGGAGAACAAGCAAACACATTTA 160033 | ||||||||||| |||| | || || ||||||||||| || ||||| |||||| Sbjct 27532 TTCATGGTGCTACCTTAGAAAGTACTTTATTTGAAGATGGTGATGGTGCAAATACATTTT 27591 Query 160034 AGGCGTTTGAGCCTACTCAAGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCT 160093 || ||| | || ||||||| ||||| |||||||| |||||||| || |||| ||| | Sbjct 27592 GTGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAACCACTTTT 27651 Query 160094 GGTCGCAGATCTTCGGTGTTGCATTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGT 160153 |||| || ||||| || ||| | ||||| || || || ||| | ||||| | ||| | | Sbjct 27652 GGTCCCAAATCTTTGGGGTTACTTTTTCCAATAAACGTTGGTTACATTTCCTTATGCTAT 27711 Query 160154 TTGTGCCTGTTATGGGTCTATGGACATCCTCTATTGGCATTATTGGTCTTGCTTTCAACC 160213 |||| | || | || |||||| || |||| | | ||||| ||| | |||| Sbjct 27712 TTGTACTAGTAACCAGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTGGCTCTGAACC 27771 Query 160214 TTCGTGCTTACGATTTCGTGAGTCAGGAGATTAGAGCAGCAGAAGATCCTGAATTTGAGA 160273 | ||||| || || || || |||||| || | |||| |||||||||||||||||||| Sbjct 27772 TACGTGCCTATGACTTTGTTTCTCAGGAAATCCGTGCAGTAGAAGATCCTGAATTTGAGA 27831 Query 160274 CCTTCTACACCAAGAACATCCTATTGAATGAAGGACTTCGTGCTTGGATGGCACCTGCTG 160333 | |||||||| || || || || || |||||||| ||| ||||||||||| || | Sbjct 27832 CTTTCTACACAAAAAATATTCTTTTAAATGAAGGTATTCATGCTTGGATGGAGGCTCAAG 27891 Query 160334 ATCAACCACATGAAAACTTTA 160354 |||| || ||||||||||||| Sbjct 27892 ATCAGCCTCATGAAAACTTTA 27912 >seq47040 Length=8764 Score = 163 bits (180), Expect = 3e-35 Identities = 165/215 (77%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 158060 GTAGCATATTCTGCTCCAGTCGCTGCAGCGAGTGCAGTATTCCTAGTCTATCCTTTCGGT 158119 || |||||||| ||||| || || || || | | | || ||| | ||||||| | ||| Sbjct 5687 GTTGCATATTCAGCTCCTGTTGCAGCTGCTACTACTGTTTTCTTGATCTATCCAATTGGT 5628 Query 158120 CAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTT 158179 ||||| || || | | || |||||| || || ||||||||||| |||| |||| || Sbjct 5627 CAAGGAAGCTTTTCTCACGGTAAGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATT 5568 Query 158180 GTATTCCAAGCAGAACACAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTGCTGGG 158239 |||||||| || || |||||||||||||||||||| || |||||| | ||||| ||||| Sbjct 5567 GTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCATATGTTAGGTGTAGCTGGT 5508 Query 158240 GTATTCGGTGGATCTCTTTTCTCTGCTATGCATGG 158274 |||||||| || | || || |||||||||||| Sbjct 5507 GTATTCGGCGGCTTCCTATTTAGTGCTATGCATGG 5473 >seq54963 Length=251348 Score = 149 bits (164), Expect = 7e-31 Identities = 162/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 158060 GTAGCATATTCTGCTCCAGTCGCTGCAGCGAGTGCAGTATTCCTAGTCTATCCTTTCGGT 158119 || |||||||| ||||| || | || || | ||| || || | ||||||| | ||| Sbjct 117193 GTTGCATATTCAGCTCCTGTTGTAGCTGCTACTGCTGTTTTATTGATCTATCCAATTGGT 117252 Query 158120 CAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTT 158179 ||||| || || || | ||||||||| || || ||||||||||| |||| |||| || Sbjct 117253 CAAGGAAGCTTTTCTGACGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATT 117312 Query 158180 GTATTCCAAGCAGAACACAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTGCTGGG 158239 |||||||| || || |||||||||||||||||||| || || ||| | |||| ||| Sbjct 117313 GTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTACGTGTAATTGGT 117372 Query 158240 GTATTCGGTGGATCTCTTTTCTCTGCTATGCATGG 158274 |||||||| || || || || || ||||||||| Sbjct 117373 GTATTCGGCGGCTCCCTATTTAGTGTTATGCATGG 117407 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 572266154271600