Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Juglans_20regia_20[refseq_20GCF_5F001411555.1_202015-10-22] 105,803 sequences; 699,672,627 total letters Query= NC_026924.1 Length=174885 Score E Sequences producing significant alignments: (Bits) Value seq1861 349 4e-91 seq47040 136 4e-27 seq54963 131 2e-25 seq54898 82.4 9e-11 >seq1861 Length=68153 Score = 349 bits (386), Expect = 4e-91 Identities = 668/978 (68%), Gaps = 16/978 (2%) Strand=Plus/Plus Query 161688 TTTGACATACTCGACGACTGGCTTAAACGGGATCGTTTCGTTTTTGTTGGCTGGTCTGGA 161747 ||||| || | || |||||| | |||| | |||||||||||| || ||||| || Sbjct 26949 TTTGATATTATGGATGACTGGTTACGGAGGGACCATTTCGTTTTTGTAGGTTGGTCCGGT 27008 Query 161748 CTTCTTCTTCTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGCACAACTTTC 161807 || | || |||| ||| ||| |||| | || |||||| |||| || ||||| || Sbjct 27009 CTATTACTCTTTCCTTGTGCCTATTTTGCCTTAGGGGGTTGGTTTACAGGTACAACCTTT 27068 Query 161808 GCAACGAGCTGGTATACCCATGGTCTCGCTAGTTCCTATCTTGAGGG-TGCAAACTTTCT 161866 | ||| | |||||| || || | || ||||||||| | || || ||||| ||| | Sbjct 27069 GTAACTTCATAGTATACACACGGATTGGCGAGTTCCTATTTGGAAGGCTGCAA-CTTCTT 27127 Query 161867 TACAGCGTCAGTTAGCACTCCAGCTGACGCTATGGGTCATTCTCTTCTTCTT-CTCTGGG 161925 || || ||||| |||| ||| | | | | || ||| || || || || |||| Sbjct 27128 AACCGCTGCAGTTTCTACTCTCGCTAATAGTTTAGCACACTCT-TTGTTGTTACTATGGG 27186 Query 161926 GTCCTGAGGCTCAAGGGGATTTCGTCCGCTGGGTCCAACTTGGGGGACTCTGGAATTTTG 161985 |||| || | ||||| ||||| | ||| ||| | || | || |||| ||||| Sbjct 27187 GTCCAGAAACACAAGGAGATTTTACTTGTTGGTGTCAATTAGGTAGTCTGTGGACTTTTG 27246 Query 161986 TGGCACTCCATGGTGCCTTCGCCCTAATTGGATTCATGCTCCGTCAGTTTGAACTGGCAC 162045 | || ||| ||| ||||| || ||| | | ||| |||||||||| || | Sbjct 27247 TTGCTCTC--TGGA---------CTAATAGGTCTCACGTTACGTTAGTTTGAACTTGCTC 27295 Query 162046 GTCTTATTGGTATCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTG 162105 | | || | || || || ||||| || || ||||||| ||| |||||| ||||| Sbjct 27296 GATCTGTTCAATTGCGACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTTTTTTTT 27355 Query 162106 TCAGCGTCTTCCTTATCTACCCATTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTG 162165 | || || || || || | | | ||||| || ||||||| || | || ||||| Sbjct 27356 TTTTGGTATTGCTGATTTATCTACTAGGTCAATCGGGTTGGTTCTTTGTGCCTAGCTTTG 27415 Query 162166 GGGTGGCAGCAATCTTTAGATTCCTGTTGTTTCTTCAAGGATTCCATAACTGGACCCTGA 162225 | || ||||| || ||| |||| | | ||| | |||| || ||||| ||||| ||| Sbjct 27416 GTGTAGCAGCTATATTTC-ATTCTTTCTCTTTTTCTAAGGGTTTCATAATTGGACATTGA 27474 Query 162226 ACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCACTTCTATCTGCTATTC 162285 |||| || ||||||||||| ||||||||| || | || | || || |||| | ||||| Sbjct 27475 ACCCATTTCATATGATGGGGGTTGCTGGTGTAATTGGCGCTGCTCTGCTATGCGTTATTC 27534 Query 162286 ACGGAGTCACAGTTGAAAATACATTATACGAGGATGGAGAACAAGCAAACACCTTTAAGG 162345 | || | || | |||| ||| |||| || ||||| || ||||| || ||| | Sbjct 27535 ATGGTGCTACCTTAGAAAGTACTTTATTTGAAGATGGTGATGGTGCAAATACATTTTGTG 27594 Query 162346 CGTTTGATTCGACACAGGAGGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGT 162405 | ||| | | || || | ||||| |||||||| |||||||| || |||| ||| |||| Sbjct 27595 CTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAACCACTTTTGGT 27654 Query 162406 CGCAGATCTTCGGTATTGCGTTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTG 162465 | || ||||| || || | ||||| || || || ||| | ||||| | ||| | |||| Sbjct 27655 CCCAAATCTTTGGGGTTACTTTTTCCAATAAACGTTGGTTACATTTCCTTATGCTATTTG 27714 Query 162466 TGCCTGTTATGGGTCTATGGACATCCTCTATTGGCATTATTGGTCTTGCTCTCAACCTTC 162525 | | || | || |||||| || |||| | | ||||| ||||| ||||| | Sbjct 27715 TACTAGTAACCAGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTGGCTCTGAACCTAC 27774 Query 162526 GTGCTTACGATTTCGTGAGTCAGGAGATCAGAGCAGCAGAAGATCCTGAGTTTGAAACGT 162585 |||| || || || || |||||| ||| | |||| |||||||||||| ||||| || | Sbjct 27775 GTGCCTATGACTTTGTTTCTCAGGAAATCCGTGCAGTAGAAGATCCTGAATTTGAGACTT 27834 Query 162586 TCTACACTAAGAACATTCTGCTCAATGAAGGACTACGTGCATGGTTAGCACCTGCCGACC 162645 ||||||| || || ||||| | |||||||| | | ||| ||| | | || || | Sbjct 27835 TCTACACAAAAAATATTCTTTTAAATGAAGGTATTCATGCTTGGATGGAGGCTCAAGATC 27894 Query 162646 AACCCCATGAGAACTTTA 162663 | || ||||| ||||||| Sbjct 27895 AGCCTCATGAAAACTTTA 27912 >seq47040 Length=8764 Score = 136 bits (150), Expect = 4e-27 Identities = 159/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 160344 GTAGCATATTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCCTCGTATATCCTTTCGGT 160403 || |||||||| ||||| || || || || || |||| ||| | | ||||| | ||| Sbjct 5687 GTTGCATATTCAGCTCCTGTTGCAGCTGCTACTACTGTTTTCTTGATCTATCCAATTGGT 5628 Query 160404 CAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTT 160463 ||||| || || | | || |||||| || || ||||||||||| |||| |||| || Sbjct 5627 CAAGGAAGCTTTTCTCACGGTAAGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATT 5568 Query 160464 GTATTCCAAGCAGAACACAATATCCTTATGCATCCGTTCCACATGCTCGGCGTTGCTGGG 160523 |||||||| || || ||||| ||||||||||| || || || ||| | || || ||||| Sbjct 5567 GTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCATATGTTAGGTGTAGCTGGT 5508 Query 160524 GTATTCGGTGGATCTTTGTTCTCTGCTATGCACGG 160558 |||||||| || | | || ||||||||| || Sbjct 5507 GTATTCGGCGGCTTCCTATTTAGTGCTATGCATGG 5473 >seq54963 Length=251348 Score = 131 bits (144), Expect = 2e-25 Identities = 158/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 160344 GTAGCATATTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCCTCGTATATCCTTTCGGT 160403 || |||||||| ||||| || | || || ||||||| || | | ||||| | ||| Sbjct 117193 GTTGCATATTCAGCTCCTGTTGTAGCTGCTACTGCTGTTTTATTGATCTATCCAATTGGT 117252 Query 160404 CAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTT 160463 ||||| || || || | ||||||||| || || ||||||||||| |||| |||| || Sbjct 117253 CAAGGAAGCTTTTCTGACGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATT 117312 Query 160464 GTATTCCAAGCAGAACACAATATCCTTATGCATCCGTTCCACATGCTCGGCGTTGCTGGG 160523 |||||||| || || ||||| ||||||||||| || || |||||| | | || ||| Sbjct 117313 GTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTACGTGTAATTGGT 117372 Query 160524 GTATTCGGTGGATCTTTGTTCTCTGCTATGCACGG 160558 |||||||| || || | || || |||||| || Sbjct 117373 GTATTCGGCGGCTCCCTATTTAGTGTTATGCATGG 117407 >seq54898 Length=422707 Score = 82.4 bits (90), Expect = 9e-11 Identities = 138/200 (69%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 161126 TACATTTTAGATGCAGCAGAAGAGGCAGGAGTTGATATTAACTATTCTTGTCGTGCTGGT 161185 ||||| ||||| |||| ||| ||||||||||| | ||||| || | ||||| Sbjct 379510 TACATCCTAGATTCAGCTGAAACTGCAGGAGTTGAGTTGCCTTATTCATGCAGGGCTGGG 379569 Query 161186 GCTTGCTCTTCCTGTGCAGGTAAAATTATTTCAGGTACAGTAGACCAGTCTGACCAGTCC 161245 ||||||| | ||||||| || || | | ||||| |||| ||||||||||| || Sbjct 379570 GCTTGCTGTACCTGTGCTGGGAAGAAGGTGTCAGGCTCAGTGGACCAGTCTGATGGCTCA 379629 Query 161246 TTCTTGGATGATGACCAGATTGAATCTGGATTCCTTTTGACATGTGTTGCATATCCTACT 161305 ||| | ||||| | || || || || | | |||| ||||| |||| || ||| Sbjct 379630 TTCCTTGATGACAAACAAATGGAGGAAGGTTATGTGCTGACTTGTGTCTCATACCCGACT 379689 Query 161306 AGCGATTGTGTGATTCAAAC 161325 || ||||||||||| || Sbjct 379690 TCTGACTGTGTGATTCACAC 379709 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 558764034978600