Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Juglans_20regia_20[refseq_20GCF_5F001411555.1_202015-10-22] 105,803 sequences; 699,672,627 total letters Query= NC_026926.1 Length=192108 Score E Sequences producing significant alignments: (Bits) Value seq1861 352 3e-92 seq47040 168 8e-37 seq54963 163 3e-35 >seq1861 Length=68153 Score = 352 bits (390), Expect = 3e-92 Identities = 664/968 (69%), Gaps = 20/968 (2%) Strand=Plus/Plus Query 182371 TGGACGACTGGGTTAAACGGGATCGCTTTGTCTTTGTGGGTTGGTCTGGACTCCTACTTC 182430 |||| |||||| | |||| | || || ||||| |||||||| || || |||| Sbjct 26959 TGGATGACTGGTTACGGAGGGACCATTTCGTTTTTGTAGGTTGGTCCGGTCTATTACTCT 27018 Query 182431 TTCCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGGACAGCTTTTGTTACGAGTT 182490 |||| ||| ||| ||||| | || |||||| |||| || ||| | ||||| || | Sbjct 27019 TTCCTTGTGCCTATTTTGCCTTAGGGGGTTGGTTTACAGGTACAACCTTTGTAACTTCAT 27078 Query 182491 GGTACACCCACGGTCTTGCTTCTTCCTATCTTGAAGG-TGCTAACTTTCTTACGGCAGCT 182549 ||| || ||||| | || ||||||| | ||||| ||| ||||| | || || || Sbjct 27079 AGTATACACACGGATTGGCGAGTTCCTATTTGGAAGGCTGC-AACTTCTTAACCGCTGCA 27137 Query 182550 GTCTCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCT 182609 || || || | ||| || | | | || ||| | | |||| |||||||| || | Sbjct 27138 GTTTCTACTCTCGCTAATAGTTTAGCACACTCTTTGTTGTTACTATGGGGTCCAGAAACA 27197 Query 182610 CAGGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTCTGGAATTTCGTGGCTCTCCAC 182669 || || |||| | ||||| ||| | || | || |||| ||| || |||||| Sbjct 27198 CAAGGAGATTTTACTTGTTGGTGTCAATTAGGTAGTCTGTGGACTTTTGTTGCTCTCT-- 27255 Query 182670 GGTGCCTTCGCTCTCATTGGTTTCATGCTTAGGCAATTTGAACTTGCTCGC-CTGATTGG 182728 | || || ||| ||| | | | | |||||||||||||| ||| || Sbjct 27256 ---------GGACTAATAGGTCTCACGTTACGTTAGTTTGAACTTGCTCGATCTG-TTCA 27305 Query 182729 AATCAGACCTTACAATGCGATTGCTTTTTCTGGTCCTATTGCTGTATTCGTCAGTGTGTT 182788 | | ||||||| ||||| || || || |||| ||| |||||| | || | || || Sbjct 27306 ATTGCGACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTTTTTTTTTTTTGGTATT 27365 Query 182789 CCTCATCTATCCTTTGGGACAGTCCTCTTGGTTTTTCGCGCCGTCCTTTGGTGTCGCGGC 182848 || || |||| | || || || |||||| || | ||| ||||||||| || || Sbjct 27366 GCTGATTTATCTACTAGGTCAATCGGGTTGGTTCTTTGTGCCTAGCTTTGGTGTAGCAGC 27425 Query 182849 GATCTT-CAGG-TTCCTGTTGTTCCTTCAGGGTTTCCACAACTGGACACTCAACCCCTTC 182906 || || || || || || ||| | |||||||| | || |||||| | ||||| || Sbjct 27426 TATATTTCATTCTTTCTCTTTTTC--TAAGGGTTTC-ATAATTGGACATTGAACCCATTT 27482 Query 182907 CATATGATGGGAGTTGCTGGTATACTGGGTGGAGCACTGCTCAGTGCTATCCATGGTGTC 182966 ||||||||||| ||||||||| || | || | || ||||| | | ||| ||||||| Sbjct 27483 CATATGATGGGGGTTGCTGGTGTAATTGGCGCTGCTCTGCTATGCGTTATTCATGGTGCT 27542 Query 182967 ACAGTAGAGAATACCTTGTATGAAGATGGAGAACAGGCAAACACATTTAAAGCGTTCGAT 183026 || |||| | ||| || | ||||||||| || ||||| |||||| || || | Sbjct 27543 ACCTTAGAAAGTACTTTATTTGAAGATGGTGATGGTGCAAATACATTTTGTGCTTTTAAC 27602 Query 183027 TCCACTCAGGAGGAGGAGACCTATTCGATGGTTACAGCGAATCGTTTTTGGTCACAAATC 183086 | ||||| | || || || ||||| ||||| || || || | |||||||| |||||| Sbjct 27603 CCAACTCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAACCACTTTTGGTCCCAAATC 27662 Query 183087 TTCGGGGTTGCGTTTAGCAATAAGCGTTGGTTGCACTTCTTTATGTTGTTTGTTCCTGTC 183146 || |||||| | ||| |||||| |||||||| || ||| ||||| | ||||| | || Sbjct 27663 TTTGGGGTTACTTTTTCCAATAAACGTTGGTTACATTTCCTTATGCTATTTGTACTAGTA 27722 Query 183147 ATGGGTCTTTGGGTCTCTTCTATTGGGATCATTGGGCTTGCTCTTAATCTTCGTGCTTAT 183206 | || | ||| | | || |||| | | || || ||||| || || ||||| ||| Sbjct 27723 ACCAGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTGGCTCTGAACCTACGTGCCTAT 27782 Query 183207 GATTTTGTGAGTCAAGAGATTAGAGCAGCAGAAGATCCTGAGTTCGAGACGTTCTACACA 183266 || ||||| ||| || || | |||| |||||||||||| || ||||| ||||||||| Sbjct 27783 GACTTTGTTTCTCAGGAAATCCGTGCAGTAGAAGATCCTGAATTTGAGACTTTCTACACA 27842 Query 183267 AAGAACATCCTTCTCAATGAAGGACTACGTGCTTGGTTGGCACCTGCCGATCAACCACAT 183326 || || || ||| | |||||||| | | ||||||| ||| || ||||| || ||| Sbjct 27843 AAAAATATTCTTTTAAATGAAGGTATTCATGCTTGGATGGAGGCTCAAGATCAGCCTCAT 27902 Query 183327 GAAAACTT 183334 |||||||| Sbjct 27903 GAAAACTT 27910 >seq47040 Length=8764 Score = 168 bits (186), Expect = 8e-37 Identities = 171/223 (77%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 181365 GTTGCATACTCTGCTCCAGTCGCAGCAGCATCTGCTGTATTCCTAGTCTATCCTTTCGGT 181424 |||||||| || ||||| || ||||| || || |||| ||| | ||||||| | ||| Sbjct 5687 GTTGCATATTCAGCTCCTGTTGCAGCTGCTACTACTGTTTTCTTGATCTATCCAATTGGT 5628 Query 181425 CAAGGTTCTTTCTCTGACGCAATGCCACTTGGCATCTCTGGTACATTCAACTACATGCTT 181484 ||||| || ||| ||| | ||| || || || |||||||| ||||||| |||| || Sbjct 5627 CAAGGAAGCTTTTCTCACGGTAAGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATT 5568 Query 181485 GTTTTCCAAGCAGAGCACAACATTCTGATGCATCCCTTCCACATGTTGGGTGTCGCAGGT 181544 || ||||| || ||||||||||| || ||||| || || || ||||| ||||| || ||| Sbjct 5567 GTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCATATGTTAGGTGTAGCTGGT 5508 Query 181545 GTATTTGGTGGTTCACTGTTCAGTGCAATGCACGGTTCTTTGG 181587 ||||| || || | || || ||||| ||||| |||||||||| Sbjct 5507 GTATTCGGCGGCTTCCTATTTAGTGCTATGCATGGTTCTTTGG 5465 >seq54963 Length=251348 Score = 163 bits (180), Expect = 3e-35 Identities = 170/223 (76%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 181365 GTTGCATACTCTGCTCCAGTCGCAGCAGCATCTGCTGTATTCCTAGTCTATCCTTTCGGT 181424 |||||||| || ||||| || | ||| || ||||||| || | ||||||| | ||| Sbjct 117193 GTTGCATATTCAGCTCCTGTTGTAGCTGCTACTGCTGTTTTATTGATCTATCCAATTGGT 117252 Query 181425 CAAGGTTCTTTCTCTGACGCAATGCCACTTGGCATCTCTGGTACATTCAACTACATGCTT 181484 ||||| || ||||||| ||||| || || || |||||||| ||||||| |||| || Sbjct 117253 CAAGGAAGCTTTTCTGACGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATT 117312 Query 181485 GTTTTCCAAGCAGAGCACAACATTCTGATGCATCCCTTCCACATGTTGGGTGTCGCAGGT 181544 || ||||| || ||||||||||| || ||||| || || |||||||| |||| ||| Sbjct 117313 GTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTACGTGTAATTGGT 117372 Query 181545 GTATTTGGTGGTTCACTGTTCAGTGCAATGCACGGTTCTTTGG 181587 ||||| || || || || || |||| ||||| |||||||||| Sbjct 117373 GTATTCGGCGGCTCCCTATTTAGTGTTATGCATGGTTCTTTGG 117415 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613804745175840