Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Juglans_20regia_20[refseq_20GCF_5F001411555.1_202015-10-22] 105,803 sequences; 699,672,627 total letters Query= NC_026927.1 Length=228143 Score E Sequences producing significant alignments: (Bits) Value seq1861 295 1e-74 seq47040 109 8e-19 seq54963 105 1e-17 >seq1861 Length=68153 Score = 295 bits (326), Expect = 1e-74 Identities = 649/968 (67%), Gaps = 16/968 (2%) Strand=Plus/Plus Query 175853 TGATATTTTGGAAGACTGGCTTCTCAGAGATAGGTTTATCTTTATTGGCTGGTCTGGATT 175912 ||||||| |||| |||||| | | || || || | ||| | || ||||| || | Sbjct 26951 TGATATTATGGATGACTGGTTACGGAGGGACCATTTCGTTTTTGTAGGTTGGTCCGGTCT 27010 Query 175913 ACTACTTCTTCCCACTGCTTATCTTGCCATTGGCGGCTGGCTTACTGGCACAACTTTTGT 175972 | |||| |||| ||| ||| ||||| | || || ||| |||| || ||||| ||||| Sbjct 27011 ATTACTCTTTCCTTGTGCCTATTTTGCCTTAGGGGGTTGGTTTACAGGTACAACCTTTGT 27070 Query 175973 CACGAGTTGGTACACCCATGGTCTTGCTTCTTCCTATCTTGAGGG-TGCTAACTTTCTCA 176031 || | ||| || || || | || ||||||| | || || ||| ||||| | | Sbjct 27071 AACTTCATAGTATACACACGGATTGGCGAGTTCCTATTTGGAAGGCTGC-AACTTCTTAA 27129 Query 176032 CAGCGGCTGTCTCGACTCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTC 176091 | || || || || |||| ||| || | | | || ||| | | |||| ||||||| Sbjct 27130 CCGCTGCAGTTTCTACTCTCGCTAATAGTTTAGCACACTCTTTGTTGTTACTATGGGGTC 27189 Query 176092 CTGAATCTCAGGGCGACTTCCAGCGGTGGCTCCAACTTGGAGGGCTTTGGTCCTTTGTTG 176151 | ||| | || || || || | ||| ||| | || | || ||| | ||||||| Sbjct 27190 CAGAAACACAAGGAGATTTTACTTGTTGGTGTCAATTAGGTAGTCTGTGGACTTTTGTTG 27249 Query 176152 CTCTCCACGGTGCCTTCGCTCTGATTGGATTCATGCTTCGTCAGTTTGAACTGGCAAGAC 176211 ||||| | || || || ||| | | ||| |||||||||| || || Sbjct 27250 CTCTCT-----------GGACTAATAGGTCTCACGTTACGTTAGTTTGAACTTGCTCGAT 27298 Query 176212 TCATTGGTATCCGTCCCTACAACGCTATTGCATTCAGTGGTCCTATCGCTGTATTTGTCA 176271 || | || || || || || || |||||| || ||| || ||| | ||| | Sbjct 27299 CTGTTCAATTGCGACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTTTTTTTTTTT 27358 Query 176272 GTGTGTTTCTTCTATACCCACTAGGTCAATCTTCCTGGTTCTTTGCCCCCTCCTTTGGTG 176331 || || || | || | |||||||||||| |||||||||| || |||||||| Sbjct 27359 TGGTATTGCTGATTTATCTACTAGGTCAATCGGGTTGGTTCTTTGTGCCTAGCTTTGGTG 27418 Query 176332 TGGCAGCAATCTTTAGATTCCTATTGTTTCT-TCAGGGTTTCCACAACTGGACACTGAAC 176390 | ||||| || ||| |||| | | ||| | | |||||||| | || |||||| ||||| Sbjct 27419 TAGCAGCTATATTTC-ATTCTTTCTCTTTTTCTAAGGGTTTC-ATAATTGGACATTGAAC 27476 Query 176391 CCCTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCACTACTATCTGCAATCCAT 176450 || || ||||||||||| ||||||||| || | || | || || |||| | || ||| Sbjct 27477 CCATTTCATATGATGGGGGTTGCTGGTGTAATTGGCGCTGCTCTGCTATGCGTTATTCAT 27536 Query 176451 GGCGTTACTGTTGAAAATACCCTATATGAAGATGGAGAACAGAACAACACCTTCACTGCG 176510 || | ||| | |||| ||| ||| ||||||||| || || || || ||| Sbjct 27537 GGTGCTACCTTAGAAAGTACTTTATTTGAAGATGGTGATGGTGCAAATACATTTTGTGCT 27596 Query 176511 TTCGATTCCACGCAGGAGGAAGAGACCTATTCGATGGTTACTGCGAACCGCTTCTGGTCG 176570 || | | || || | ||||| || ||||| ||||| || || |||| ||| ||||| Sbjct 27597 TTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAACCACTTTTGGTCC 27656 Query 176571 CAAATCTTCGGGGTTGCGTTTAGTAATAAGCGTTGGCTTCACTTCTTTATGTTGTTTGTC 176630 |||||||| |||||| | ||| ||||| |||||| | || ||| ||||| | ||||| Sbjct 27657 CAAATCTTTGGGGTTACTTTTTCCAATAAACGTTGGTTACATTTCCTTATGCTATTTGTA 27716 Query 176631 CCTGTCATGGGTCTTTGGGTCTCAAGTATTGGCATCATTGGGCTTGCTCTTAATCTTCGT 176690 | || | || | ||| | | |||| | | || || ||||| || || ||| Sbjct 27717 CTAGTAACCAGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTGGCTCTGAACCTACGT 27776 Query 176691 GCTTATGATTTTGTGAGCCAAGAGATTAGAGCAGCAGAAGATCCTGAGTTTGAAACTTTC 176750 || ||||| ||||| || || || | |||| |||||||||||| ||||| |||||| Sbjct 27777 GCCTATGACTTTGTTTCTCAGGAAATCCGTGCAGTAGAAGATCCTGAATTTGAGACTTTC 27836 Query 176751 TACACAAAGAACATCCTTCTTAACGAAGGACTAAGAGCATGGATGGCACCTGTGGATCAA 176810 |||||||| || || ||| | || ||||| | || ||||||| || ||||| Sbjct 27837 TACACAAAAAATATTCTTTTAAATGAAGGTATTCATGCTTGGATGGAGGCTCAAGATCAG 27896 Query 176811 CCACATGA 176818 || ||||| Sbjct 27897 CCTCATGA 27904 >seq47040 Length=8764 Score = 109 bits (120), Expect = 8e-19 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 174852 GTAGCATACTCTGCACCAGTTGCAGCAGCTTCAGCAGTATTCCTAGTCTATCCTTTCGGT 174911 || ||||| || || || |||||||| ||| | | || ||| | ||||||| | ||| Sbjct 5687 GTTGCATATTCAGCTCCTGTTGCAGCTGCTACTACTGTTTTCTTGATCTATCCAATTGGT 5628 Query 174912 CAAGGTTCATTCTCAGACGCGATGCCCTTGGGTATCTCTGGAACATTCAACTACATGTTG 174971 ||||| || || ||| | ||| | || || ||||| || ||||||| |||| | Sbjct 5627 CAAGGAAGCTTTTCTCACGGTAAGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATT 5568 Query 174972 GTCTTCCAAGCAGAACATAACATCTTGATGCACCCCTTCCACATGTTGGGAGTCGCAGGT 175031 || ||||| || || || |||||| | |||||||| || || ||||| || || || ||| Sbjct 5567 GTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCATATGTTAGGTGTAGCTGGT 5508 Query 175032 GTCTTCGGTGGTTCATTGTTCTCAGCGATGCATGGTTC 175069 || ||||| || | | || || ||||||||||| Sbjct 5507 GTATTCGGCGGCTTCCTATTTAGTGCTATGCATGGTTC 5470 >seq54963 Length=251348 Score = 105 bits (116), Expect = 1e-17 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 174852 GTAGCATACTCTGCACCAGTTGCAGCAGCTTCAGCAGTATTCCTAGTCTATCCTTTCGGT 174911 || ||||| || || || |||| ||| ||| | || || || | ||||||| | ||| Sbjct 117193 GTTGCATATTCAGCTCCTGTTGTAGCTGCTACTGCTGTTTTATTGATCTATCCAATTGGT 117252 Query 174912 CAAGGTTCATTCTCAGACGCGATGCCCTTGGGTATCTCTGGAACATTCAACTACATGTTG 174971 ||||| || || |||| ||||| | || || ||||| || ||||||| |||| | Sbjct 117253 CAAGGAAGCTTTTCTGACGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATT 117312 Query 174972 GTCTTCCAAGCAGAACATAACATCTTGATGCACCCCTTCCACATGTTGGGAGTCGCAGGT 175031 || ||||| || || || |||||| | |||||||| || |||||||| | || ||| Sbjct 117313 GTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTACGTGTAATTGGT 117372 Query 175032 GTCTTCGGTGGTTCATTGTTCTCAGCGATGCATGGTTC 175069 || ||||| || || | || | ||||||||||| Sbjct 117373 GTATTCGGCGGCTCCCTATTTAGTGTTATGCATGGTTC 117410 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 728964240731640