Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Juglans_20regia_20[refseq_20GCF_5F001411555.1_202015-10-22] 105,803 sequences; 699,672,627 total letters Query= NC_026928.1 Length=189418 Score E Sequences producing significant alignments: (Bits) Value seq1861 334 9e-87 seq47040 168 8e-37 seq54963 163 3e-35 >seq1861 Length=68153 Score = 334 bits (370), Expect = 9e-87 Identities = 643/940 (68%), Gaps = 20/940 (2%) Strand=Plus/Plus Query 179233 TGGACGACTGGGTTAAACGGGATCGCTTTGTCTTTGTGGGTTGGTCTGGACTCCTACTTC 179292 |||| |||||| | |||| | || || ||||| |||||||| || || |||| Sbjct 26959 TGGATGACTGGTTACGGAGGGACCATTTCGTTTTTGTAGGTTGGTCCGGTCTATTACTCT 27018 Query 179293 TTCCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGGACAGCTTTTGTTACGAGTT 179352 |||| ||| ||| ||||| | || |||||| |||| || ||| | ||||| || | Sbjct 27019 TTCCTTGTGCCTATTTTGCCTTAGGGGGTTGGTTTACAGGTACAACCTTTGTAACTTCAT 27078 Query 179353 GGTACACCCACGGTCTTGCTAGTTCCTATCTTGAGGG-TGCTAACTTTCTTACGGCAGCT 179411 ||| || ||||| | || ||||||||| | || || ||| ||||| | || || || Sbjct 27079 AGTATACACACGGATTGGCGAGTTCCTATTTGGAAGGCTGC-AACTTCTTAACCGCTGCA 27137 Query 179412 GTCTCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCT 179471 || || || | ||| || | | | || ||| | | |||| |||||||| || | Sbjct 27138 GTTTCTACTCTCGCTAATAGTTTAGCACACTCTTTGTTGTTACTATGGGGTCCAGAAACA 27197 Query 179472 CAGGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTCTGGAATTTCGTGGCTCTCCAC 179531 || || |||| | ||||| ||| | || | || |||| ||| || |||||| Sbjct 27198 CAAGGAGATTTTACTTGTTGGTGTCAATTAGGTAGTCTGTGGACTTTTGTTGCTCTCT-- 27255 Query 179532 GGTGCCTTCGCTCTCATTGGTTTCATGCTTAGGCAATTTGAACTTGCTCGC-CTGATTGG 179590 | || || ||| ||| | | | | |||||||||||||| ||| | Sbjct 27256 ---------GGACTAATAGGTCTCACGTTACGTTAGTTTGAACTTGCTCGATCTGTTCAA 27306 Query 179591 TATCAGACCTTACAATGCGATTGCTTTTTCTGGTCCTATTGCTGTATTCGTCAGTGTTTT 179650 | | ||||||| ||||| || || || |||| ||| |||||| | || | || || Sbjct 27307 TTGC-GACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTTTTTTTTTTTTGGTATT 27365 Query 179651 CCTCATCTATCCTTTGGGACAGTCCTCTTGGTTTTTCGCGCCGTCCTTTGGTGTCGCGGC 179710 || || |||| | || || || |||||| || | ||| ||||||||| || || Sbjct 27366 GCTGATTTATCTACTAGGTCAATCGGGTTGGTTCTTTGTGCCTAGCTTTGGTGTAGCAGC 27425 Query 179711 GATCTT-CAGGTTCTTGCTGTTCCT-TCAGGGTTTCCACAACTGGACGCTCAACCCCTTC 179768 || || || ||||| || || | | |||||||| | || ||||| | ||||| || Sbjct 27426 TATATTTCA--TTCTTTCTCTTTTTCTAAGGGTTTC-ATAATTGGACATTGAACCCATTT 27482 Query 179769 CATATGATGGGAGTTGCTGGTATACTAGGAGGAGCACTGCTCAGTGCTATCCATGGAGTT 179828 ||||||||||| ||||||||| || | || | || ||||| | | ||| ||||| | | Sbjct 27483 CATATGATGGGGGTTGCTGGTGTAATTGGCGCTGCTCTGCTATGCGTTATTCATGGTGCT 27542 Query 179829 ACTGTAGAGAATACATTGTATGAAGATGGAGAACAAGCAAATACCTTTAAGGCGTTTGAT 179888 || |||| | ||| || | ||||||||| || |||||||| ||| || ||| | Sbjct 27543 ACCTTAGAAAGTACTTTATTTGAAGATGGTGATGGTGCAAATACATTTTGTGCTTTTAAC 27602 Query 179889 TCGACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATC 179948 | || || | ||||| |||||||| |||||||| || |||| ||| ||||| || ||| Sbjct 27603 CCAACTCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAACCACTTTTGGTCCCAAATC 27662 Query 179949 TTCGGTATTGCATTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTT 180008 || || || | ||||| || || || ||| | ||||| | ||| | ||||| | || Sbjct 27663 TTTGGGGTTACTTTTTCCAATAAACGTTGGTTACATTTCCTTATGCTATTTGTACTAGTA 27722 Query 180009 ATGGGTCTATGGACATCCTCTATTGGCATTATTGGTCTTGCTCTCAACCTTCGTGCTTAC 180068 | || |||||| || |||| | | ||||| ||||| ||||| ||||| || Sbjct 27723 ACCAGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTGGCTCTGAACCTACGTGCCTAT 27782 Query 180069 GATTTCGTAAGTCAGGAGATCAGAGCAGCAGAAGATCCCGAGTTTGAGACCTTCTACACC 180128 || || || |||||| ||| | |||| ||||||||| || |||||||| |||||||| Sbjct 27783 GACTTTGTTTCTCAGGAAATCCGTGCAGTAGAAGATCCTGAATTTGAGACTTTCTACACA 27842 Query 180129 AAGAACATTCTTCTCAATGAAGGACTACGTGCATGGTTGG 180168 || || |||||| | |||||||| | | ||| ||| ||| Sbjct 27843 AAAAATATTCTTTTAAATGAAGGTATTCATGCTTGGATGG 27882 >seq47040 Length=8764 Score = 168 bits (186), Expect = 8e-37 Identities = 171/223 (77%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 178233 GTAGCATACTCTGCTCCAGTAGCAGCAGCATCGGCAGTATTCCTGGTCTATCCTTTCGGT 178292 || ||||| || ||||| || ||||| || | | || ||| || ||||||| | ||| Sbjct 5687 GTTGCATATTCAGCTCCTGTTGCAGCTGCTACTACTGTTTTCTTGATCTATCCAATTGGT 5628 Query 178293 CAAGGTTCATTTTCTGACGCAATGCCACTTGGCATCTCTGGTACATTCAACTACATGCTT 178352 ||||| |||||| ||| | ||| || || || |||||||| ||||||| |||| || Sbjct 5627 CAAGGAAGCTTTTCTCACGGTAAGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATT 5568 Query 178353 GTTTTCCAAGCAGAACACAACATTCTGATGCACCCCTTCCACATGTTGGGTGTCGCAGGT 178412 || ||||| || || |||||||| || |||||||| || || ||||| ||||| || ||| Sbjct 5567 GTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCATATGTTAGGTGTAGCTGGT 5508 Query 178413 GTATTCGGTGGTTCACTGTTCAGTGCAATGCACGGTTCTTTGG 178455 |||||||| || | || || ||||| ||||| |||||||||| Sbjct 5507 GTATTCGGCGGCTTCCTATTTAGTGCTATGCATGGTTCTTTGG 5465 >seq54963 Length=251348 Score = 163 bits (180), Expect = 3e-35 Identities = 170/223 (76%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 178233 GTAGCATACTCTGCTCCAGTAGCAGCAGCATCGGCAGTATTCCTGGTCTATCCTTTCGGT 178292 || ||||| || ||||| || | ||| || | || || || || ||||||| | ||| Sbjct 117193 GTTGCATATTCAGCTCCTGTTGTAGCTGCTACTGCTGTTTTATTGATCTATCCAATTGGT 117252 Query 178293 CAAGGTTCATTTTCTGACGCAATGCCACTTGGCATCTCTGGTACATTCAACTACATGCTT 178352 ||||| |||||||||| ||||| || || || |||||||| ||||||| |||| || Sbjct 117253 CAAGGAAGCTTTTCTGACGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATT 117312 Query 178353 GTTTTCCAAGCAGAACACAACATTCTGATGCACCCCTTCCACATGTTGGGTGTCGCAGGT 178412 || ||||| || || |||||||| || |||||||| || |||||||| |||| ||| Sbjct 117313 GTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTACGTGTAATTGGT 117372 Query 178413 GTATTCGGTGGTTCACTGTTCAGTGCAATGCACGGTTCTTTGG 178455 |||||||| || || || || |||| ||||| |||||||||| Sbjct 117373 GTATTCGGCGGCTCCCTATTTAGTGTTATGCATGGTTCTTTGG 117415 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 605208129578640