Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Juglans_20regia_20[refseq_20GCF_5F001411555.1_202015-10-22] 105,803 sequences; 699,672,627 total letters Query= NC_027132.1 Length=190768 Score E Sequences producing significant alignments: (Bits) Value seq1861 345 5e-90 seq47040 163 3e-35 seq54963 149 8e-31 >seq1861 Length=68153 Score = 345 bits (382), Expect = 5e-90 Identities = 647/946 (68%), Gaps = 16/946 (2%) Strand=Plus/Plus Query 180051 GACCGCTTTGTATTTGTGGGCTGGTCTGGACTACTACTTCTTCCCACTGCTTATCTTGCC 180110 |||| || || ||||| || ||||| || ||| |||| |||| ||| ||| ||||| Sbjct 26979 GACCATTTCGTTTTTGTAGGTTGGTCCGGTCTATTACTCTTTCCTTGTGCCTATTTTGCC 27038 Query 180111 ATTGGCGGTTGGCTTACTGGCACAGCTTTTGTCACGAGTTGGTACACCCACGGTCTTGCT 180170 | || |||||| |||| || ||| | ||||| || | ||| || ||||| | || Sbjct 27039 TTAGGGGGTTGGTTTACAGGTACAACCTTTGTAACTTCATAGTATACACACGGATTGGCG 27098 Query 180171 TCTTCCTATCTTGAAGG-TGCTAACTTTCTTACGGCAGCTGTCTCGACGCCTGCTGACGC 180229 ||||||| | ||||| ||| ||||| | || || || || || || | ||| | Sbjct 27099 AGTTCCTATTTGGAAGGCTGC-AACTTCTTAACCGCTGCAGTTTCTACTCTCGCTAATAG 27157 Query 180230 TATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAGGGGAATTTCCAACGGTG 180289 | | | || ||| | | |||| |||||||| || | || || |||| | || Sbjct 27158 TTTAGCACACTCTTTGTTGTTACTATGGGGTCCAGAAACACAAGGAGATTTTACTTGTTG 27217 Query 180290 GTGCCAACTTGGGGGACTCTGGAATTTCGTGGCTCTCCACGGTGCCTTCGCCCTAATTGG 180349 ||| ||| | || | || |||| ||| || |||||| | ||||| || Sbjct 27218 GTGTCAATTAGGTAGTCTGTGGACTTTTGTTGCTCTCT-----------GGACTAATAGG 27266 Query 180350 ATTTATGCTACGCCAGTTTGAACTGGCACGTCTTATTGGTATCCGTCCTTACAATGCTAT 180409 | | | |||| |||||||||| || || | || | || ||||| ||||| || Sbjct 27267 TCTCACGTTACGTTAGTTTGAACTTGCTCGATCTGTTCAATTGCGACCTTATAATGCAAT 27326 Query 180410 TGCATTCTCTGGTCCTATCGCTGTATTTGTCAGCGTATTTCTCATCTACCCACTGGGTCA 180469 |||||||||| ||| || ||| | ||| | ||||| || || || | ||| ||||| Sbjct 27327 CGCATTCTCTGCTCCAATTGCTTTTTTTTTTTTGGTATTGCTGATTTATCTACTAGGTCA 27386 Query 180470 GTCCAGTTGGTTCTTTGCTCCCTCTTTTGGGGTAGCAGCAATCTTTAGATTCCTACTCTT 180529 || |||||||||||| || ||||| |||||||| || ||| |||| | ||||| Sbjct 27387 ATCGGGTTGGTTCTTTGTGCCTAGCTTTGGTGTAGCAGCTATATTTC-ATTCTTTCTCTT 27445 Query 180530 TCT-TCAGGGTTTCCACAACTGGACCCTCAACCCCTTCCATATGATGGGAGTTGCTGGTA 180588 | | | |||||||| | || ||||| | ||||| || ||||||||||| ||||||||| Sbjct 27446 TTTCTAAGGGTTTC-ATAATTGGACATTGAACCCATTTCATATGATGGGGGTTGCTGGTG 27504 Query 180589 TACTAGGTGGAGCATTGCTATCAGCAATCCATGGCGTAACTGTGGAGAACACACTGTATG 180648 || | || | || |||||| | || ||||| | || | || | || | | || Sbjct 27505 TAATTGGCGCTGCTCTGCTATGCGTTATTCATGGTGCTACCTTAGAAAGTACTTTATTTG 27564 Query 180649 AAGATGGAGAACAAGCAAACACCTTTAAGGCATTTGATTCAACGCAAGAGGAGGAAACTT 180708 ||||||| || ||||| || ||| || ||| | |||| |||| || ||||||| Sbjct 27565 AAGATGGTGATGGTGCAAATACATTTTGTGCTTTTAACCCAACTCAAGCTGAAGAAACTT 27624 Query 180709 ACTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCATTTTCTAACA 180768 | || |||||||| || |||| ||| ||||| || ||||| || || | ||||| || | Sbjct 27625 ATTCAATGGTCACCGCTAACCACTTTTGGTCCCAAATCTTTGGGGTTACTTTTTCCAATA 27684 Query 180769 AGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTATGGACATCCTCTA 180828 | || ||| | ||||| | ||| | ||||| | || | || |||||| || Sbjct 27685 AACGTTGGTTACATTTCCTTATGCTATTTGTACTAGTAACCAGTTTATGGATGAGTGCTC 27744 Query 180829 TTGGCATTATTGGTCTTGCTCTCAACCTTCGTGCTTACGATTTCGTGAGTCAAGAGATCA 180888 |||| | | ||||| ||||| ||||| ||||| || || || || ||| || ||| Sbjct 27745 TTGGAGTAGTCGGTCTGGCTCTGAACCTACGTGCCTATGACTTTGTTTCTCAGGAAATCC 27804 Query 180889 GAGCAGCAGAAGATCCTGAGTTCGAGACGTTCTACACCAAGAACATCCTATTGAATGAAG 180948 | |||| |||||||||||| || ||||| |||||||| || || || || || ||||||| Sbjct 27805 GTGCAGTAGAAGATCCTGAATTTGAGACTTTCTACACAAAAAATATTCTTTTAAATGAAG 27864 Query 180949 GACTACGTGCATGGTTGGCACCTGCCGATCAACCACACGAAAACTT 180994 | | | ||| ||| ||| || ||||| || || |||||||| Sbjct 27865 GTATTCATGCTTGGATGGAGGCTCAAGATCAGCCTCATGAAAACTT 27910 >seq47040 Length=8764 Score = 163 bits (180), Expect = 3e-35 Identities = 165/215 (77%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 179245 GTTGCATACTCTGCACCAGTCGCTGCTGCGAGTGCAGTATTCCTCGTCTATCCTTTCGGT 179304 |||||||| || || || || || ||||| | | | || ||| | ||||||| | ||| Sbjct 5687 GTTGCATATTCAGCTCCTGTTGCAGCTGCTACTACTGTTTTCTTGATCTATCCAATTGGT 5628 Query 179305 CAAGGTTCTTTCTCTGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTT 179364 ||||| || ||| | | || |||||| || || ||||||||||| |||| |||| || Sbjct 5627 CAAGGAAGCTTTTCTCACGGTAAGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATT 5568 Query 179365 GTATTCCAAGCAGAACACAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTGCTGGG 179424 |||||||| || || |||||||||||||||||||| || |||||| | ||||| ||||| Sbjct 5567 GTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCATATGTTAGGTGTAGCTGGT 5508 Query 179425 GTATTCGGTGGATCTCTTTTCTCTGCTATGCACGG 179459 |||||||| || | || || ||||||||| || Sbjct 5507 GTATTCGGCGGCTTCCTATTTAGTGCTATGCATGG 5473 >seq54963 Length=251348 Score = 149 bits (164), Expect = 8e-31 Identities = 162/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 179245 GTTGCATACTCTGCACCAGTCGCTGCTGCGAGTGCAGTATTCCTCGTCTATCCTTTCGGT 179304 |||||||| || || || || | ||||| | ||| || || | ||||||| | ||| Sbjct 117193 GTTGCATATTCAGCTCCTGTTGTAGCTGCTACTGCTGTTTTATTGATCTATCCAATTGGT 117252 Query 179305 CAAGGTTCTTTCTCTGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTT 179364 ||||| || ||||| | ||||||||| || || ||||||||||| |||| |||| || Sbjct 117253 CAAGGAAGCTTTTCTGACGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATT 117312 Query 179365 GTATTCCAAGCAGAACACAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTGCTGGG 179424 |||||||| || || |||||||||||||||||||| || || ||| | |||| ||| Sbjct 117313 GTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTACGTGTAATTGGT 117372 Query 179425 GTATTCGGTGGATCTCTTTTCTCTGCTATGCACGG 179459 |||||||| || || || || || |||||| || Sbjct 117373 GTATTCGGCGGCTCCCTATTTAGTGTTATGCATGG 117407 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 609522416216640